BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0526400 Os08g0526400|AK120803
(252 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0526400 Nitrate-induced NOI family protein 140 1e-33
Os03g0848600 Similar to NOI protein 70 1e-12
Os11g0226400 Nitrate-induced NOI family protein 64 8e-11
>Os08g0526400 Nitrate-induced NOI family protein
Length = 252
Score = 140 bits (352), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 70/101 (69%), Positives = 70/101 (69%)
Query: 152 LVANSRAKXXXXXAPRGNETPTRGSAVPRFGDWDSNPASADGYTHIFNKVREEKQTXXXX 211
LVANSRAK APRGNETPTRGSAVPRFGDWDSNPASADGYTHIFNKVREEKQT
Sbjct: 152 LVANSRAKGGGGGAPRGNETPTRGSAVPRFGDWDSNPASADGYTHIFNKVREEKQTGQAA 211
Query: 212 XXXXXXXXXXXXXXXXXXXXXXRYHDDDFASTKCSCFGWCK 252
RYHDDDFASTKCSCFGWCK
Sbjct: 212 GKPAAGLGKGGAAAAGHGNAAKRYHDDDFASTKCSCFGWCK 252
Score = 111 bits (277), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 52/52 (100%), Positives = 52/52 (100%)
Query: 1 MQQQQKKNAHVPKFGNWDNGGNVPYTVYFENARKGKVAAAGKMFNPNDPVDN 52
MQQQQKKNAHVPKFGNWDNGGNVPYTVYFENARKGKVAAAGKMFNPNDPVDN
Sbjct: 1 MQQQQKKNAHVPKFGNWDNGGNVPYTVYFENARKGKVAAAGKMFNPNDPVDN 52
>Os03g0848600 Similar to NOI protein
Length = 242
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 47/87 (54%), Gaps = 11/87 (12%)
Query: 167 RGNETPTRGSAVPRFGDWDS-NPASADGYTHIFNKVREEKQTXXXXXXXXXXXXXXXXXX 225
RG+ETP RGSAVP+FG+WD +P++ +G+T IF KVREEKQ+
Sbjct: 165 RGDETPDRGSAVPKFGEWDEKDPSTGEGFTDIFEKVREEKQS----------GTGNAPVM 214
Query: 226 XXXXXXXXRYHDDDFASTKCSCFGWCK 252
RY + ST CSCF W K
Sbjct: 215 TSEADYIKRYQQRKYESTGCSCFSWFK 241
>Os11g0226400 Nitrate-induced NOI family protein
Length = 488
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Query: 175 GSAVPRFGDWDSNPASADGYTHIFNKVREEKQTXXXXXXXXXXXXXXXXXXXXXXXXXXR 234
SAVP+FG+WDS AD YT IFN+ REEK++ R
Sbjct: 419 ASAVPKFGEWDSPLRPADNYTSIFNRAREEKRS--------QVEKPSVFDKDDLLVRRTR 470
Query: 235 YHDDDFASTKCSCFGWCK 252
+D ASTKCSCFGWCK
Sbjct: 471 NRNDGHASTKCSCFGWCK 488
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.131 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,024,309
Number of extensions: 139669
Number of successful extensions: 300
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 296
Number of HSP's successfully gapped: 4
Length of query: 252
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 154
Effective length of database: 11,918,829
Effective search space: 1835499666
Effective search space used: 1835499666
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)