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Os03g0848600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to NOI protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.1 (0.0174) R2 : 0.782
β1 : -2.03 (0.0698) R2dD : 0.521 R2D : 0.221
β2 : 1.03 (0.0411) R2dC : 0.304 R2C : 0.333
β3 : 1.38 (0.0754) R2dE : 0.219 R2E : -0.00954
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.155 (0.0393) R2dN8 : 0.0119 R2N8 : -0.0434
σ : 0.319
deviance : 46.84
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C
peak time of C : 1.5
E
wheather : temperature
threshold : 15.37
memory length : 3417
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
45.42 0.317 11.2 -2.3 1.03 1.3 0.276 -1.23 -0.234 1.5 16.72 3439 -- --
46.76 0.318 11.1 -2.03 1.04 1.37 0.321 -- -0.177 1.38 16.1 3400 -- --
45.69 0.315 11.2 -2.32 1.04 1.3 -- -1.26 -0.235 1.5 16.9 3361 -- --
46.84 0.319 11.1 -2.03 1.03 1.38 -- -- -0.155 1.5 15.37 3417 -- --
99.71 0.465 11.2 -2.36 -- 1.53 -- -1.25 -0.287 -- 17.21 2481 -- --
80.89 0.422 11.1 -1.44 1.1 -- 0.264 -- 0.118 1.35 -- -- -- --
81.17 0.422 11.1 -1.45 1.1 -- -- -- 0.116 1.35 -- -- -- --
100.94 0.468 11.1 -2.03 -- 1.57 -- -- -0.2 -- 16.04 2485 -- --
128.93 0.529 11 -- 1.06 0.48 -- -- 0.21 1.1 21.4 1545 -- --
156.08 0.584 11 -1.41 -- -- -- -- 0.139 -- -- -- -- --
136.6 0.547 11 -- 1.08 -- -- -- 0.278 1.31 -- -- -- --
181.53 0.628 11 -- -- 0.89 -- -- 0.15 -- 21.6 1038 -- --
208.29 0.674 11 -- -- -- -- -- 0.295 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 43.54 radiation 1.0 14400 > th dose independent rect. 18 13
3 43.66 radiation 1.0 14400 < th dose independent rect. 18 13
8 44.10 temperature 15.0 1440 > th dose dependent rect. 5 2
11 44.21 temperature 30.0 1440 < th dose dependent rect. 5 2
14 44.30 radiation 1.0 14400 < th dose independent rect. 5 2
15 44.33 radiation 1.0 14400 > th dose independent rect. 5 2
18 44.37 radiation 1.0 14400 < th dose independent rect. 14 17
19 44.38 radiation 1.0 14400 > th dose independent rect. 18 23
20 44.40 radiation 1.0 14400 < th dose independent rect. 24 7
30 44.41 radiation 1.0 14400 < th dose independent rect. 10 21
36 44.45 radiation 1.0 14400 > th dose independent rect. 14 17
37 44.46 radiation 1.0 43200 > th dose independent rect. 18 1
70 44.47 radiation 1.0 14400 > th dose independent rect. 16 15
75 44.48 humidity 90.0 43200 > th dose dependent rect. 6 1
78 44.50 radiation 1.0 14400 < th dose independent rect. 18 23
79 44.51 radiation 1.0 14400 > th dose independent rect. 10 21
86 44.57 radiation 1.0 43200 < th dose independent rect. 17 10
89 44.58 radiation 1.0 43200 < th dose independent rect. 17 2
91 44.58 radiation 1.0 43200 < th dose independent rect. 17 8
100 44.61 temperature 15.0 1440 > th dose dependent rect. 18 13
104 44.68 radiation 1.0 14400 > th dose independent sin 12 NA
112 44.71 radiation 1.0 14400 < th dose independent sin 12 NA
113 44.71 precipitation 0.1 43200 < th dose independent rect. 2 7
116 44.71 precipitation 0.1 43200 < th dose dependent rect. 2 7
127 44.75 temperature 30.0 1440 < th dose dependent rect. 18 13
137 44.79 precipitation 0.1 43200 > th dose independent rect. 2 7
148 44.81 humidity 90.0 43200 > th dose dependent rect. 5 12
166 44.85 radiation 1.0 14400 < th dose dependent rect. 5 1
169 44.86 radiation 1.0 14400 > th dose independent rect. 4 13
194 44.89 radiation 1.0 14400 < th dose independent rect. 22 19
196 44.89 precipitation 0.1 43200 > th dose dependent rect. 2 7
200 44.90 radiation 1.0 14400 < th dose independent rect. 2 15
209 44.90 radiation 1.0 14400 < th dose independent rect. 14 23
223 44.91 radiation 1.0 14400 < th dose independent rect. 5 12
235 44.92 radiation 1.0 14400 < th dose independent no NA NA
256 44.92 radiation 1.0 14400 < th dose independent rect. 4 21
319 44.96 precipitation 0.1 43200 < th dose independent rect. 6 1
322 44.96 precipitation 0.1 43200 < th dose dependent rect. 6 1
353 45.01 radiation 1.0 14400 > th dose independent no NA NA
406 45.02 precipitation 0.1 43200 > th dose independent rect. 6 1
407 45.02 precipitation 0.1 43200 > th dose dependent rect. 6 1
434 45.05 radiation 1.0 14400 < th dose dependent rect. 21 9
454 45.08 humidity 90.0 43200 > th dose independent rect. 6 1
455 45.08 wind 7.0 43200 > th dose independent rect. 5 5
464 45.10 radiation 1.0 14400 < th dose independent sin 23 NA
469 45.11 wind 7.0 43200 < th dose independent rect. 5 5
507 45.15 temperature 15.0 1440 > th dose dependent sin 12 NA
514 45.16 radiation 1.0 14400 < th dose independent rect. 14 12
525 45.17 radiation 1.0 14400 < th dose independent rect. 14 5
527 45.17 radiation 1.0 14400 < th dose independent rect. 14 8
538 45.18 radiation 1.0 14400 < th dose independent rect. 9 16
547 45.19 radiation 1.0 14400 < th dose independent rect. 9 10
606 45.23 radiation 1.0 14400 > th dose independent rect. 14 5
653 45.26 radiation 1.0 14400 > th dose independent sin 23 NA
706 45.30 radiation 1.0 14400 > th dose independent rect. 9 10
707 45.30 humidity 90.0 43200 > th dose independent rect. 5 11
813 45.36 humidity 90.0 43200 > th dose dependent sin 23 NA
934 45.44 temperature 30.0 1440 < th dose dependent sin 11 NA
937 45.45 wind 7.0 43200 < th dose independent rect. 9 1
955 45.46 humidity 90.0 43200 > th dose independent sin 0 NA
967 45.46 radiation 1.0 14400 < th dose dependent rect. 14 17
998 45.50 radiation 30.0 14400 > th dose independent rect. 7 1