BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0848600 Os03g0848600|AK065662
(242 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G25070.1 | chr3:9132458-9133747 FORWARD LENGTH=212 94 4e-20
AT5G55850.2 | chr5:22603617-22604951 FORWARD LENGTH=131 54 9e-08
AT2G04410.1 | chr2:1534012-1535040 REVERSE LENGTH=74 52 3e-07
AT2G17660.1 | chr2:7673359-7673568 FORWARD LENGTH=70 50 1e-06
AT4G35655.1 | chr4:16910755-16910961 FORWARD LENGTH=69 48 4e-06
AT5G63270.1 | chr5:25365498-25365949 REVERSE LENGTH=81 47 9e-06
>AT3G25070.1 | chr3:9132458-9133747 FORWARD LENGTH=212
Length = 211
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 81/251 (32%), Positives = 122/251 (48%), Gaps = 55/251 (21%)
Query: 1 MAHKGVPKFGSWEDEDRGEHLYTQYFENARKGKSPGRSV-NPNNHHGDTEALSKASPLHA 59
MA VPKFG+WE E+ YT YF+ ARK ++PG + NPN+ ++++ S+A P H
Sbjct: 1 MARSNVPKFGNWEAEENVP--YTAYFDKARKTRAPGSKIMNPNDPEYNSDSQSQAPP-HP 57
Query: 60 GSDPAMRKPKDDRRSNREGDLRQHETTVRKPYA-------ESPNHRYG---DHTNYDNAV 109
S + D R +RE +R E + K + E+ N R G + +YDN
Sbjct: 58 PSSRTKPEQVDTVRRSRE-HMRSREESELKQFGDAGGSSNEAANKRQGRASQNNSYDN-- 114
Query: 110 RKTGIEKSPVHPRHQARAANKGGVSSPSRDRRGSLEGNRGSAPTTPGRSKFRSTG-RGDE 168
KSP+H + S +G G+S+ + T R DE
Sbjct: 115 ------KSPLH--------------------KNSYDGT--------GKSRPKPTNLRADE 140
Query: 169 TPDRGSAVPKFGEWDEKDPSTGEGFTDIFEKVREEKQSGTGNAPVMTSEADYIKRYQQRK 228
+P++ + VPKFG+WDE +PS+ +G+T IF KVREE+ SG A V S + +
Sbjct: 141 SPEKVTVVPKFGDWDENNPSSADGYTHIFNKVREERSSG---ANVSGSSRTPTHQSSRNP 197
Query: 229 YESTGCSCFSW 239
++ C CF +
Sbjct: 198 NNTSSCCCFGF 208
>AT5G55850.2 | chr5:22603617-22604951 FORWARD LENGTH=131
Length = 130
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 29/37 (78%)
Query: 171 DRGSAVPKFGEWDEKDPSTGEGFTDIFEKVREEKQSG 207
D+G +PKFGEWD DP++ EGFT IF K R+EK++G
Sbjct: 19 DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTG 55
>AT2G04410.1 | chr2:1534012-1535040 REVERSE LENGTH=74
Length = 73
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 27/37 (72%)
Query: 171 DRGSAVPKFGEWDEKDPSTGEGFTDIFEKVREEKQSG 207
D+G +PKFGEWD DPS+ EGFT IF K R EK+ G
Sbjct: 3 DKGRPLPKFGEWDVNDPSSAEGFTVIFNKARNEKKGG 39
>AT2G17660.1 | chr2:7673359-7673568 FORWARD LENGTH=70
Length = 69
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 27/35 (77%)
Query: 173 GSAVPKFGEWDEKDPSTGEGFTDIFEKVREEKQSG 207
G A+PKFGEWD DP+T +GFT IF K E+K++G
Sbjct: 7 GRALPKFGEWDVNDPATADGFTVIFSKAGEDKKTG 41
>AT4G35655.1 | chr4:16910755-16910961 FORWARD LENGTH=69
Length = 68
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 25/32 (78%)
Query: 176 VPKFGEWDEKDPSTGEGFTDIFEKVREEKQSG 207
+PKFGEWD DP+T EGFT IF K E+K++G
Sbjct: 10 LPKFGEWDVNDPATAEGFTVIFSKAGEDKKTG 41
>AT5G63270.1 | chr5:25365498-25365949 REVERSE LENGTH=81
Length = 80
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 27/36 (75%)
Query: 171 DRGSAVPKFGEWDEKDPSTGEGFTDIFEKVREEKQS 206
++G +PKFGEWD +P++ EGFT IF K +EK++
Sbjct: 4 NKGKPLPKFGEWDVNNPASAEGFTVIFSKASDEKKT 39
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.310 0.129 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,430,675
Number of extensions: 304707
Number of successful extensions: 722
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 718
Number of HSP's successfully gapped: 7
Length of query: 242
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 146
Effective length of database: 8,474,633
Effective search space: 1237296418
Effective search space used: 1237296418
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 110 (47.0 bits)