BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0848600 Os03g0848600|AK065662
         (242 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0848600  Similar to NOI protein                              499   e-142
Os04g0379600  Nitrate-induced NOI family protein                   87   8e-18
Os02g0504700  Conserved hypothetical protein                       81   7e-16

>Os03g0848600 Similar to NOI protein
          Length = 242

 Score =  499 bits (1286), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 242/242 (100%), Positives = 242/242 (100%)

Query: 1   MAHKGVPKFGSWEDEDRGEHLYTQYFENARKGKSPGRSVNPNNHHGDTEALSKASPLHAG 60
           MAHKGVPKFGSWEDEDRGEHLYTQYFENARKGKSPGRSVNPNNHHGDTEALSKASPLHAG
Sbjct: 1   MAHKGVPKFGSWEDEDRGEHLYTQYFENARKGKSPGRSVNPNNHHGDTEALSKASPLHAG 60

Query: 61  SDPAMRKPKDDRRSNREGDLRQHETTVRKPYAESPNHRYGDHTNYDNAVRKTGIEKSPVH 120
           SDPAMRKPKDDRRSNREGDLRQHETTVRKPYAESPNHRYGDHTNYDNAVRKTGIEKSPVH
Sbjct: 61  SDPAMRKPKDDRRSNREGDLRQHETTVRKPYAESPNHRYGDHTNYDNAVRKTGIEKSPVH 120

Query: 121 PRHQARAANKGGVSSPSRDRRGSLEGNRGSAPTTPGRSKFRSTGRGDETPDRGSAVPKFG 180
           PRHQARAANKGGVSSPSRDRRGSLEGNRGSAPTTPGRSKFRSTGRGDETPDRGSAVPKFG
Sbjct: 121 PRHQARAANKGGVSSPSRDRRGSLEGNRGSAPTTPGRSKFRSTGRGDETPDRGSAVPKFG 180

Query: 181 EWDEKDPSTGEGFTDIFEKVREEKQSGTGNAPVMTSEADYIKRYQQRKYESTGCSCFSWF 240
           EWDEKDPSTGEGFTDIFEKVREEKQSGTGNAPVMTSEADYIKRYQQRKYESTGCSCFSWF
Sbjct: 181 EWDEKDPSTGEGFTDIFEKVREEKQSGTGNAPVMTSEADYIKRYQQRKYESTGCSCFSWF 240

Query: 241 KN 242
           KN
Sbjct: 241 KN 242



>Os04g0379600 Nitrate-induced NOI family protein
          Length = 224

 Score = 87.4 bits (215), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 81/244 (33%), Positives = 118/244 (48%), Gaps = 28/244 (11%)

Query: 1   MAHKGVPKFGSWEDEDRGEHLYTQYFENARKGKSPGRSVNPNNHHGDTEALSKASPLHAG 60
           MA   +P FG+W+    G   YTQ FENARK K  G S +PN+     E  SK SPLH  
Sbjct: 1   MAQPDIPAFGNWDTT--GNTPYTQKFENARKNKKAGISSHPNDPRRHPEPPSK-SPLHPA 57

Query: 61  SDPAMR-----KPKDDRRSNREGDL-RQHETTVRKPYAESPNHRYGDHTNYDNAVRKTGI 114
             P  +      P+  RR  +E D  R+H  + ++          G  +   +  R    
Sbjct: 58  YTPDAQGQSPMNPQHGRR--QEADPHRRHSLSQQREVGG------GIGSAPRSPYRMVHG 109

Query: 115 EKSPVHPRHQARAANKG-GVSSPSRDRRGSLEGNRGSAPTTPGRSKFRSTGRGDETPDRG 173
             SP  P + ++  ++  G+ +P  +RR S EG+      TP RS+ +  GRG + P+  
Sbjct: 110 SASPAQPNNPSKPKHRSSGMQTP--ERRASSEGH---GQHTPRRSRDKQGGRGYDAPEDD 164

Query: 174 SAVPKFGEWDEKDPSTGEGFTDIFEKVREEKQSGTGNAPVMTSEADYIKRYQQRKYESTG 233
            AVP FGEWDE + ++GE FT IF +VR++K S     P  ++      R Q+ K + T 
Sbjct: 165 VAVPPFGEWDEGNAASGEKFTGIFNRVRDDKLS-----PNTSTRQPDTNRSQENKVKQTC 219

Query: 234 CSCF 237
             C 
Sbjct: 220 PCCI 223



>Os02g0504700 Conserved hypothetical protein
          Length = 272

 Score = 80.9 bits (198), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 71/215 (33%), Positives = 101/215 (46%), Gaps = 22/215 (10%)

Query: 5   GVPKFGSWEDEDRGEHLYTQYFENARKGKSPGRSVNPNNHHGDTEALSKA-----SPLHA 59
           GVP FG+W     G+  YTQ FEN R+ K     V  N +   TE   +      SPLH 
Sbjct: 19  GVPTFGNWSAA--GDTPYTQKFENLRRSKKTATGVYSNPNEVITETPDQPPPPLRSPLHP 76

Query: 60  GSDPAMRKPKDDRRSNREGDLR-----QHETTVRKPYAESPNHRYGDHTNYDNAVRKTGI 114
            S  A+ + +   R    G  R      H  TV + +A      + DH  Y  + R    
Sbjct: 77  SSHDALNQRQRYERKPETGHPRPAGSPLHRETVARRHANPLQQHHLDHGGYGGSPRSPYR 136

Query: 115 E---KSPVHPRHQARAANKGGVSSPSRDRRGSLEGNRGSAPTTPGRSKFRSTGRGDETPD 171
           E    +   PR + R+A   G+ +P  DR+ S   + G  P TPGRS+ +  GRG E   
Sbjct: 137 EVAAAAAASPRSRYRSA---GMQTP--DRKAS--SSDGRVPVTPGRSRLKQGGRGFEPAL 189

Query: 172 RGSAVPKFGEWDEKDPSTGEGFTDIFEKVREEKQS 206
               VP FG+WD+ + ++GE +T IF +VR +K +
Sbjct: 190 DEVTVPPFGDWDDANAASGEKYTGIFNRVRRDKLT 224



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.310    0.129    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,416,443
Number of extensions: 522522
Number of successful extensions: 1415
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1406
Number of HSP's successfully gapped: 4
Length of query: 242
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 144
Effective length of database: 11,918,829
Effective search space: 1716311376
Effective search space used: 1716311376
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 154 (63.9 bits)