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Os04g0379600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Nitrate-induced NOI family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12 (0.0288) R2 : 0.442
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.809 (0.0723) R2dC : 0.156 R2C : 0.0268
β3 : 1.5 (0.124) R2dE : 0.234 R2E : -0.158
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.04 (0.067) R2dN8 : 0.474 R2N8 : 0.0715
σ : 0.523
deviance : 125.88
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C
peak time of C : 19.3
E
wheather : wind
threshold : 1.598
memory length : 4419
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 6.01
open length of G : 0.522

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
104.54 0.48 12 0.488 0.812 1.42 0.404 -4.88 0.968 19.4 1.153 4566 6.03 0.517
114.83 0.499 12 0.673 0.78 1.3 0.507 -- 1.06 19.3 1.451 4471 6 0.517
104.2 0.475 12 0.434 0.815 1.53 -- -5.76 0.931 19.3 1.1 4557 6.05 0.469
115.31 0.5 12 0.67 0.809 1.28 -- -- 1.04 19.3 1.582 4419 6.01 0.517
139.26 0.55 12 0.412 -- 1.5 -- -6.31 0.909 -- 1.054 4436 6.06 0.467
141.36 0.557 12 0.939 0.754 -- 0.649 -- 0.732 19.4 -- -- -- --
142.46 0.559 12 0.925 0.758 -- -- -- 0.734 19.3 -- -- -- --
147.48 0.566 12 0.675 -- 1.28 -- -- 1.05 -- 1.6 4049 6.01 0.532
125.88 0.523 12 -- 0.809 1.5 -- -- 1.04 19.3 1.598 4419 6.01 0.522
172.9 0.614 12 0.912 -- -- -- -- 0.721 -- -- -- -- --
165 0.601 12 -- 0.749 -- -- -- 0.631 19.4 -- -- -- --
157.98 0.585 11.9 -- -- 1.41 -- -- 0.973 -- 1.616 4015 6.02 0.565
194.82 0.651 12 -- -- -- -- -- 0.62 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 111.21 wind 1.0 4320 < th dose dependent rect. 6 1
3 113.68 wind 1.0 1440 < th dose independent rect. 6 1
4 114.49 wind 1.0 1440 > th dose independent rect. 6 1
6 115.99 humidity 90.0 14400 < th dose independent rect. 6 1
8 116.84 humidity 90.0 14400 > th dose dependent rect. 6 1
9 116.96 humidity 90.0 14400 > th dose independent rect. 6 1
10 117.28 radiation 1.0 1440 < th dose independent rect. 11 1
11 117.28 radiation 1.0 1440 < th dose dependent rect. 11 1
13 117.38 radiation 1.0 1440 > th dose independent rect. 11 1
14 118.05 radiation 1.0 1440 > th dose independent rect. 9 4
24 118.87 humidity 60.0 43200 < th dose dependent rect. 5 3
26 119.12 humidity 90.0 14400 > th dose dependent rect. 13 2
27 119.17 humidity 90.0 14400 > th dose dependent rect. 5 11
28 119.23 humidity 90.0 14400 < th dose independent rect. 14 1
33 119.35 wind 7.0 14400 > th dose independent rect. 18 1
64 119.85 humidity 70.0 43200 < th dose dependent rect. 22 10
71 120.07 humidity 90.0 14400 > th dose dependent sin 2 NA
104 120.52 humidity 90.0 14400 > th dose independent rect. 1 16
124 120.72 wind 7.0 43200 > th dose dependent rect. 18 1
135 120.77 humidity 90.0 14400 < th dose independent rect. 24 17
142 120.83 radiation 20.0 1440 < th dose dependent rect. 11 1
148 120.87 humidity 90.0 14400 > th dose independent rect. 14 1
155 120.96 humidity 70.0 43200 > th dose independent rect. 23 8
159 120.99 humidity 60.0 43200 < th dose independent rect. 21 11
165 121.05 temperature 20.0 1440 > th dose independent rect. 22 3
166 121.05 humidity 60.0 43200 > th dose independent rect. 21 11
171 121.08 humidity 70.0 43200 < th dose independent rect. 23 8
181 121.15 temperature 20.0 1440 < th dose independent rect. 22 3
194 121.22 temperature 20.0 1440 > th dose independent rect. 23 1
198 121.27 temperature 20.0 1440 < th dose independent rect. 23 1
234 121.49 temperature 20.0 1440 > th dose independent rect. 6 1
240 121.51 atmosphere 995.0 43200 > th dose independent rect. 21 17
241 121.51 wind 7.0 14400 > th dose dependent rect. 23 2
248 121.53 atmosphere 995.0 43200 < th dose independent rect. 21 17
255 121.56 radiation 40.0 4320 < th dose independent rect. 15 18
263 121.59 wind 5.0 4320 > th dose independent rect. 9 1
269 121.62 atmosphere 995.0 43200 < th dose independent rect. 22 15
291 121.74 wind 1.0 43200 > th dose independent rect. 20 16
299 121.81 wind 7.0 14400 < th dose independent rect. 18 1
305 121.82 wind 3.0 43200 < th dose dependent rect. 5 4
312 121.88 precipitation 0.1 43200 > th dose dependent rect. 24 8
318 121.89 atmosphere 995.0 43200 < th dose dependent sin 9 NA
325 121.92 wind 3.0 43200 < th dose dependent rect. 6 1
329 121.93 atmosphere 995.0 43200 > th dose independent rect. 24 12
332 121.94 humidity 90.0 14400 > th dose independent sin 3 NA
347 121.98 atmosphere 995.0 43200 > th dose independent rect. 1 10
348 121.98 atmosphere 995.0 43200 < th dose independent rect. 1 10
351 122.01 wind 5.0 4320 < th dose independent rect. 9 1
356 122.01 radiation 10.0 4320 > th dose dependent rect. 17 1
371 122.04 precipitation 0.1 43200 > th dose independent rect. 24 8
382 122.07 wind 3.0 43200 > th dose independent rect. 8 1
388 122.09 wind 1.0 1440 > th dose independent rect. 5 7
390 122.09 precipitation 0.1 43200 < th dose independent rect. 24 8
391 122.09 precipitation 0.1 43200 < th dose dependent rect. 24 8
396 122.14 wind 1.0 1440 < th dose independent rect. 6 6
397 122.14 humidity 90.0 14400 < th dose independent rect. 2 6
398 122.14 atmosphere 995.0 43200 < th dose independent rect. 2 8
403 122.15 atmosphere 995.0 43200 < th dose independent sin 6 NA
410 122.17 atmosphere 995.0 43200 < th dose dependent rect. 4 4
413 122.19 atmosphere 995.0 43200 < th dose dependent rect. 1 8
414 122.19 radiation 10.0 4320 > th dose dependent rect. 17 14
433 122.25 atmosphere 995.0 43200 > th dose independent rect. 5 3
446 122.28 atmosphere 995.0 43200 < th dose independent rect. 3 6
455 122.29 atmosphere 995.0 43200 > th dose independent rect. 4 5
461 122.31 atmosphere 995.0 43200 < th dose dependent rect. 11 21
469 122.32 atmosphere 995.0 43200 < th dose dependent rect. 11 19
476 122.35 radiation 1.0 1440 > th dose independent rect. 9 1
477 122.35 wind 3.0 43200 < th dose dependent rect. 3 6
479 122.36 wind 5.0 43200 < th dose dependent rect. 8 1
515 122.46 wind 3.0 4320 > th dose dependent rect. 8 1
523 122.49 atmosphere 995.0 43200 < th dose independent rect. 5 3
536 122.53 atmosphere 995.0 43200 < th dose dependent rect. 21 13
550 122.59 atmosphere 995.0 43200 > th dose independent sin 6 NA
557 122.60 precipitation 0.1 43200 > th dose dependent rect. 7 1
567 122.63 humidity 90.0 14400 < th dose independent sin 4 NA
568 122.63 precipitation 0.1 43200 > th dose independent rect. 7 1
598 122.70 wind 3.0 43200 < th dose independent rect. 8 1
615 122.75 wind 3.0 43200 < th dose dependent rect. 4 1
624 122.77 humidity 80.0 14400 > th dose dependent rect. 23 10
632 122.80 precipitation 0.1 43200 < th dose independent rect. 7 1
636 122.80 precipitation 0.1 43200 < th dose dependent rect. 7 1
667 122.89 wind 1.0 43200 > th dose independent rect. 3 9
705 122.99 wind 1.0 43200 > th dose dependent rect. 8 1
707 123.00 wind 7.0 14400 > th dose independent rect. 23 1
714 123.01 radiation 10.0 4320 < th dose independent rect. 17 1
722 123.02 wind 7.0 14400 < th dose independent rect. 23 1
730 123.04 radiation 20.0 4320 > th dose dependent rect. 7 1
739 123.07 humidity 90.0 14400 < th dose independent rect. 23 10
750 123.09 radiation 20.0 4320 > th dose dependent rect. 16 16
755 123.11 temperature 20.0 1440 < th dose independent rect. 22 9
770 123.15 wind 1.0 43200 < th dose independent rect. 19 18
784 123.18 temperature 20.0 1440 < th dose independent rect. 5 2
801 123.22 temperature 20.0 1440 > th dose independent rect. 21 10
833 123.26 radiation 40.0 1440 > th dose independent rect. 8 1
856 123.26 wind 1.0 43200 < th dose dependent rect. 3 22
857 123.27 precipitation 0.1 43200 > th dose independent rect. 3 1
879 123.30 precipitation 0.1 43200 < th dose independent rect. 3 1
880 123.30 radiation 40.0 4320 < th dose independent rect. 5 4
881 123.30 precipitation 0.1 43200 < th dose dependent rect. 3 1
893 123.32 radiation 40.0 4320 < th dose independent rect. 3 6
944 123.42 radiation 40.0 4320 < th dose independent rect. 7 2
963 123.45 radiation 40.0 4320 < th dose independent rect. 1 8
965 123.45 temperature 30.0 4320 > th dose dependent rect. 8 1
992 123.47 humidity 50.0 43200 < th dose independent rect. 6 2