BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0379600 Os04g0379600|AK101106
         (224 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G25070.1  | chr3:9132458-9133747 FORWARD LENGTH=212             82   3e-16

>AT3G25070.1 | chr3:9132458-9133747 FORWARD LENGTH=212
          Length = 211

 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 108/232 (46%), Gaps = 35/232 (15%)

Query: 1   MAQPDIPAFGNWDTTGNTPYTQKFENARKNKKAGIS-SHPNDPRRHPEPPSKSPLHPAYT 59
           MA+ ++P FGNW+   N PYT  F+ ARK +  G    +PNDP               Y 
Sbjct: 1   MARSNVPKFGNWEAEENVPYTAYFDKARKTRAPGSKIMNPNDPE--------------YN 46

Query: 60  PDAQGQSPMNPQHGRR--QEADPHRR---HSLSQQREVGGGIGSAPRSPYRMVHGSASPA 114
            D+Q Q+P +P   R   ++ D  RR   H  S++       G A  S     +     A
Sbjct: 47  SDSQSQAPPHPPSSRTKPEQVDTVRRSREHMRSREESELKQFGDAGGSSNEAANKRQGRA 106

Query: 115 QPNNPSKPKHRSSGMQTPERRASSEGHGQHTPRRSRDKQGGRGYDAPEDDVAVPPFGEWD 174
             NN       S   ++P  + S +G G+  P+ +      R  ++PE    VP FG+WD
Sbjct: 107 SQNN-------SYDNKSPLHKNSYDGTGKSRPKPT----NLRADESPEKVTVVPKFGDWD 155

Query: 175 EGNAASGEKFTGIFNRVRDDKLS---PNTSTRQPDTNRSQENKVKQTCPCCI 223
           E N +S + +T IFN+VR+++ S    + S+R P T++S  N    +  CC 
Sbjct: 156 ENNPSSADGYTHIFNKVREERSSGANVSGSSRTP-THQSSRNPNNTSSCCCF 206



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.310    0.129    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,068,955
Number of extensions: 287420
Number of successful extensions: 1063
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1065
Number of HSP's successfully gapped: 3
Length of query: 224
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 129
Effective length of database: 8,502,049
Effective search space: 1096764321
Effective search space used: 1096764321
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 110 (47.0 bits)