BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0515900 Os08g0515900|J080309P03
         (56 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0515900  Conserved hypothetical protein                      114   1e-26
Os09g0493500  NAD-dependent epimerase/dehydratase family pro...    95   1e-20
Os01g0127500  NAD-dependent epimerase/dehydratase family pro...    69   1e-12

>Os08g0515900 Conserved hypothetical protein
          Length = 56

 Score =  114 bits (285), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 56/56 (100%), Positives = 56/56 (100%)

Query: 1  IWYAIAKTLAEKAAWEFAKENGIDLVAVLPTFVVGPNLSHELSPTTTDVLGLFQGT 56
          IWYAIAKTLAEKAAWEFAKENGIDLVAVLPTFVVGPNLSHELSPTTTDVLGLFQGT
Sbjct: 1  IWYAIAKTLAEKAAWEFAKENGIDLVAVLPTFVVGPNLSHELSPTTTDVLGLFQGT 56



>Os09g0493500 NAD-dependent epimerase/dehydratase family protein
          Length = 366

 Score = 94.7 bits (234), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/55 (74%), Positives = 48/55 (87%)

Query: 1   IWYAIAKTLAEKAAWEFAKENGIDLVAVLPTFVVGPNLSHELSPTTTDVLGLFQG 55
           +WYA+AK  AEKAAWEFAKEN IDLV VLP+FV+GP+LSHELS T +D+LGL QG
Sbjct: 199 LWYALAKISAEKAAWEFAKENNIDLVTVLPSFVIGPSLSHELSVTASDILGLLQG 253



>Os01g0127500 NAD-dependent epimerase/dehydratase family protein
          Length = 337

 Score = 68.6 bits (166), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 39/55 (70%)

Query: 1   IWYAIAKTLAEKAAWEFAKENGIDLVAVLPTFVVGPNLSHELSPTTTDVLGLFQG 55
           +WYA AKTLAE+ AW  AKE G+D+VAV P+FVVGP LS   + T   VL L +G
Sbjct: 170 LWYAYAKTLAEREAWRLAKERGLDMVAVNPSFVVGPILSQAPTSTALIVLALLRG 224



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.134    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,896,672
Number of extensions: 54801
Number of successful extensions: 121
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 3
Length of query: 56
Length of database: 17,035,801
Length adjustment: 29
Effective length of query: 27
Effective length of database: 15,521,595
Effective search space: 419083065
Effective search space used: 419083065
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 149 (62.0 bits)