Os09g0493500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : NAD-dependent epimerase/dehydratase family protein.
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Os09g0493500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : NAD-dependent epimerase/dehydratase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.52 | 0.208 | 8.04 | -0.0189 | 0.605 | -0.5 | -0.137 | 0.779 | -0.0328 | 10.1 | 25.42 | 1326 | -- | -- |
| 19.94 | 0.208 | 8.04 | -0.22 | 0.605 | -0.446 | -0.0951 | -- | -0.0511 | 10 | 25.32 | 1287 | -- | -- |
| 19.59 | 0.206 | 8.04 | -0.0199 | 0.606 | -0.499 | -- | 0.797 | -0.0319 | 10.1 | 25.4 | 1329 | -- | -- |
| 19.84 | 0.207 | 8.07 | -0.23 | 0.613 | -0.403 | -- | -- | -0.0986 | 10.1 | 25.95 | 1343 | -- | -- |
| 31.99 | 0.263 | 8.01 | 0.277 | -- | -0.985 | -- | 2.12 | 0.0948 | -- | 24.09 | 891 | -- | -- |
| 26.81 | 0.243 | 8.08 | -0.367 | 0.641 | -- | -0.0976 | -- | -0.124 | 10.4 | -- | -- | -- | -- |
| 26.85 | 0.243 | 8.08 | -0.371 | 0.641 | -- | -- | -- | -0.125 | 10.4 | -- | -- | -- | -- |
| 33.19 | 0.268 | 8.07 | -0.18 | -- | -0.808 | -- | -- | -0.0327 | -- | 24 | 871 | -- | -- |
| 21.11 | 0.214 | 8.06 | -- | 0.612 | -0.472 | -- | -- | -0.0438 | 10 | 24.94 | 1344 | -- | -- |
| 51.94 | 0.337 | 8.09 | -0.381 | -- | -- | -- | -- | -0.127 | -- | -- | -- | -- | -- |
| 30.47 | 0.258 | 8.07 | -- | 0.643 | -- | -- | -- | -0.0833 | 10.4 | -- | -- | -- | -- |
| 33.93 | 0.271 | 8.07 | -- | -- | -0.847 | -- | -- | -0.00356 | -- | 23.9 | 876 | -- | -- |
| 55.77 | 0.349 | 8.08 | -- | -- | -- | -- | -- | -0.0844 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.55 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 7 |
| 2 | 18.58 | humidity | 70 | 720 | > th | dose independent | sin | 11 | NA |
| 5 | 18.80 | humidity | 80 | 720 | < th | dose dependent | rect. | 17 | 3 |
| 6 | 18.81 | humidity | 70 | 720 | < th | dose independent | sin | 12 | NA |
| 8 | 18.84 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 9 |
| 11 | 18.89 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 15 |
| 18 | 18.97 | humidity | 70 | 720 | < th | dose independent | rect. | 16 | 4 |
| 29 | 18.98 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 17 |
| 44 | 19.19 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 15 |
| 50 | 19.30 | humidity | 70 | 720 | < th | dose independent | rect. | 16 | 19 |
| 76 | 19.33 | radiation | 20 | 1440 | < th | dose dependent | rect. | 18 | 9 |
| 82 | 19.34 | humidity | 80 | 720 | < th | dose dependent | rect. | 16 | 20 |
| 96 | 19.45 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 17 |
| 119 | 19.58 | humidity | 80 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 125 | 19.60 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 16 |
| 149 | 19.61 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 171 | 19.63 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 3 |
| 172 | 19.63 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 8 |
| 173 | 19.63 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 11 |
| 174 | 19.63 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 182 | 19.63 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 21 |
| 188 | 19.63 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 195 | 19.64 | temperature | 25 | 1440 | > th | dose dependent | sin | 23 | NA |
| 197 | 19.64 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 224 | 19.64 | temperature | 25 | 1440 | > th | dose dependent | rect. | 21 | 23 |
| 257 | 19.66 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 20 |
| 276 | 19.66 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 23 |
| 278 | 19.67 | temperature | 30 | 1440 | < th | dose independent | sin | 13 | NA |
| 314 | 19.68 | temperature | 30 | 1440 | > th | dose independent | rect. | 16 | 3 |
| 354 | 19.69 | radiation | 1 | 720 | > th | dose dependent | rect. | 17 | 13 |
| 384 | 19.71 | temperature | 30 | 1440 | > th | dose independent | sin | 13 | NA |
| 385 | 19.71 | humidity | 60 | 4320 | > th | dose independent | rect. | 18 | 7 |
| 423 | 19.73 | temperature | 30 | 1440 | > th | dose independent | rect. | 17 | 21 |
| 497 | 19.79 | humidity | 60 | 4320 | > th | dose independent | rect. | 18 | 2 |
| 541 | 19.81 | humidity | 60 | 4320 | > th | dose independent | rect. | 18 | 13 |
| 577 | 19.84 | radiation | 40 | 1440 | > th | dose dependent | sin | 13 | NA |
| 583 | 19.85 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 587 | 19.85 | radiation | 40 | 1440 | > th | dose independent | rect. | 13 | 21 |
| 590 | 19.85 | radiation | 10 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 597 | 19.86 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 607 | 19.86 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 610 | 19.86 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 7 |
| 615 | 19.86 | radiation | 40 | 1440 | > th | dose dependent | rect. | 12 | 23 |
| 658 | 19.89 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 3 |
| 672 | 19.90 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 6 |
| 681 | 19.90 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 10 |
| 695 | 19.90 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 18 |
| 698 | 19.90 | wind | 5 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 718 | 19.91 | radiation | 40 | 1440 | > th | dose independent | sin | 12 | NA |
| 725 | 19.91 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 784 | 19.93 | humidity | 60 | 4320 | < th | dose independent | rect. | 18 | 2 |
| 811 | 19.94 | humidity | 50 | 4320 | > th | dose independent | rect. | 13 | 4 |
| 842 | 19.95 | humidity | 70 | 720 | > th | dose independent | rect. | 4 | 20 |
| 853 | 19.96 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 6 |
| 931 | 19.97 | temperature | 30 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 946 | 19.97 | temperature | 30 | 1440 | < th | dose independent | rect. | 5 | 14 |
| 957 | 19.97 | temperature | 30 | 1440 | < th | dose independent | rect. | 5 | 19 |
| 965 | 19.98 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |