Os01g0127500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : NAD-dependent epimerase/dehydratase family protein.
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Os01g0127500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : NAD-dependent epimerase/dehydratase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 213.31 | 0.686 | 2.86 | 0.208 | 0.127 | 0.785 | 0.121 | 0.1 | 0.0656 | 3.39 | 50.04 | 12 | -- | -- |
| 211.96 | 0.683 | 2.87 | 0.236 | 0.122 | 0.74 | 0.0197 | -- | 0.0583 | 3.48 | 50.1 | 12 | -- | -- |
| 209.28 | 0.679 | 2.86 | 0.251 | 0.108 | 0.926 | -- | 1.75 | 0.0832 | 3.5 | 50.35 | 12 | -- | -- |
| 211.54 | 0.682 | 2.86 | 0.242 | 0.115 | 0.882 | -- | -- | 0.0882 | 3.32 | 50.36 | 12 | -- | -- |
| 208.76 | 0.673 | 2.85 | 0.317 | -- | 1.36 | -- | 1.93 | 0.141 | -- | 54.8 | 5 | -- | -- |
| 222.04 | 0.699 | 2.86 | 0.202 | 0.0957 | -- | 0.0808 | -- | 0.0812 | 8.07 | -- | -- | -- | -- |
| 222.06 | 0.698 | 2.86 | 0.205 | 0.0953 | -- | -- | -- | 0.0812 | 8.32 | -- | -- | -- | -- |
| 212.23 | 0.679 | 2.85 | 0.295 | -- | 1.23 | -- | -- | 0.15 | -- | 54.63 | 5 | -- | -- |
| 213.08 | 0.684 | 2.86 | -- | 0.118 | 0.862 | -- | -- | 0.0612 | 3.38 | 50.36 | 12 | -- | -- |
| 222.56 | 0.697 | 2.86 | 0.205 | -- | -- | -- | -- | 0.0823 | -- | -- | -- | -- | -- |
| 223.17 | 0.699 | 2.86 | -- | 0.0963 | -- | -- | -- | 0.0584 | 8.16 | -- | -- | -- | -- |
| 213.83 | 0.683 | 2.86 | -- | -- | 0.812 | -- | -- | 0.0635 | -- | 50.36 | 12 | -- | -- |
| 223.68 | 0.698 | 2.87 | -- | -- | -- | -- | -- | 0.0595 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 198.37 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 15 | 5 |
| 14 | 199.74 | temperature | 20.0 | 90 | < th | dose independent | rect. | 14 | 6 |
| 23 | 200.56 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 18 | 1 |
| 24 | 200.57 | temperature | 20.0 | 90 | < th | dose independent | rect. | 18 | 1 |
| 105 | 205.58 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 106 | 205.79 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 133 | 207.55 | wind | 7.0 | 10 | > th | dose dependent | rect. | 19 | 3 |
| 138 | 207.56 | wind | 7.0 | 10 | > th | dose independent | rect. | 19 | 3 |
| 143 | 207.57 | wind | 7.0 | 10 | > th | dose independent | rect. | 19 | 1 |
| 145 | 207.57 | wind | 7.0 | 10 | > th | dose dependent | rect. | 19 | 1 |
| 162 | 207.82 | wind | 9.0 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 170 | 208.10 | wind | 9.0 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 187 | 209.61 | wind | 9.0 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 205 | 210.44 | wind | 9.0 | 4320 | > th | dose independent | rect. | 13 | 3 |
| 257 | 211.38 | wind | 5.0 | 90 | > th | dose independent | rect. | 17 | 4 |
| 291 | 212.00 | wind | 1.0 | 10 | < th | dose independent | rect. | 23 | 1 |
| 295 | 212.00 | wind | 1.0 | 10 | < th | dose dependent | rect. | 23 | 1 |
| 300 | 212.01 | precipitation | 0.1 | 30 | > th | dose independent | rect. | 21 | 3 |
| 305 | 212.01 | precipitation | 0.1 | 30 | > th | dose dependent | rect. | 21 | 3 |
| 309 | 212.04 | precipitation | 0.1 | 30 | > th | dose independent | rect. | 23 | 1 |
| 312 | 212.04 | precipitation | 0.1 | 30 | > th | dose dependent | rect. | 23 | 1 |
| 320 | 212.07 | wind | 9.0 | 4320 | < th | dose independent | rect. | 13 | 3 |
| 326 | 212.14 | temperature | 25.0 | 10 | > th | dose independent | rect. | 5 | 1 |
| 373 | 212.95 | humidity | 80.0 | 4320 | < th | dose dependent | rect. | 4 | 3 |
| 441 | 213.76 | wind | 5.0 | 10 | > th | dose dependent | rect. | 12 | 1 |
| 459 | 214.04 | radiation | 40.0 | 10 | < th | dose independent | rect. | 3 | 23 |
| 471 | 214.18 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 5 | 2 |
| 489 | 214.34 | radiation | 40.0 | 10 | < th | dose independent | rect. | 6 | 20 |
| 494 | 214.39 | wind | 7.0 | 270 | > th | dose independent | rect. | 17 | 1 |
| 511 | 214.61 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 5 | 2 |
| 554 | 214.84 | wind | 5.0 | 10 | > th | dose independent | rect. | 12 | 1 |
| 559 | 214.85 | radiation | 40.0 | 10 | > th | dose independent | rect. | 10 | 3 |
| 584 | 214.95 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 21 | 19 |
| 602 | 214.99 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 18 | 22 |
| 624 | 215.06 | wind | 1.0 | 90 | < th | dose dependent | rect. | 2 | 1 |
| 647 | 215.15 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 18 | 1 |
| 652 | 215.19 | humidity | 90.0 | 90 | > th | dose independent | rect. | 18 | 1 |
| 668 | 215.29 | radiation | 40.0 | 10 | < th | dose independent | rect. | 6 | 11 |
| 673 | 215.31 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 678 | 215.34 | temperature | 20.0 | 90 | > th | dose independent | rect. | 13 | 12 |
| 690 | 215.36 | radiation | 40.0 | 10 | > th | dose dependent | rect. | 10 | 3 |
| 701 | 215.39 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 19 | 1 |
| 702 | 215.39 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 13 | 2 |
| 728 | 215.50 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 13 | 2 |
| 738 | 215.55 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 2 | 1 |
| 742 | 215.57 | wind | 9.0 | 4320 | < th | dose independent | rect. | 13 | 7 |
| 778 | 215.64 | radiation | 30.0 | 10 | < th | dose independent | rect. | 6 | 8 |
| 785 | 215.66 | temperature | 20.0 | 90 | < th | dose independent | sin | 21 | NA |
| 788 | 215.66 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 5 | 1 |
| 804 | 215.70 | radiation | 30.0 | 10 | > th | dose dependent | rect. | 10 | 6 |
| 829 | 215.73 | radiation | 30.0 | 10 | > th | dose dependent | sin | 22 | NA |
| 852 | 215.76 | temperature | 20.0 | 90 | > th | dose independent | sin | 21 | NA |
| 936 | 215.85 | radiation | 30.0 | 10 | > th | dose dependent | no | NA | NA |