BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0512700 Os08g0512700|AK060545
(467 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0512700 Similar to 3-hydroxy-3-methylglutaryl coenzyme... 808 0.0
Os09g0492700 Similar to 3-hydroxy-3-methylglutaryl coenzyme... 716 0.0
AK110180 412 e-115
Os02g0713900 Similar to 3-hydroxy-3-methylglutaryl coenzyme... 332 4e-91
>Os08g0512700 Similar to 3-hydroxy-3-methylglutaryl coenzyme A reductase (EC
1.1.1.34) (Fragment)
Length = 467
Score = 808 bits (2087), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/467 (86%), Positives = 403/467 (86%)
Query: 1 SDDEEEDFLXXXXXXXXXXXXXXXXXXXXXXXQCSLLGSPHDDAARERMPEEDEEIVSSV 60
SDDEEEDFL QCSLLGSPHDDAARERMPEEDEEIVSSV
Sbjct: 1 SDDEEEDFLVGPARGSSAAAAVAPPPPPSSPAQCSLLGSPHDDAARERMPEEDEEIVSSV 60
Query: 61 VAGKVPSYVLETKLGDCRRAAGIRREAVRRITGRQIEGLPLDGFDYASILGQCCELPVGY 120
VAGKVPSYVLETKLGDCRRAAGIRREAVRRITGRQIEGLPLDGFDYASILGQCCELPVGY
Sbjct: 61 VAGKVPSYVLETKLGDCRRAAGIRREAVRRITGRQIEGLPLDGFDYASILGQCCELPVGY 120
Query: 121 VQLPVGIAGPLLLDGQRFYVPMATTEGCLVASTNRGCKAIAESGGAVSVVLRDGMTRAPV 180
VQLPVGIAGPLLLDGQRFYVPMATTEGCLVASTNRGCKAIAESGGAVSVVLRDGMTRAPV
Sbjct: 121 VQLPVGIAGPLLLDGQRFYVPMATTEGCLVASTNRGCKAIAESGGAVSVVLRDGMTRAPV 180
Query: 181 ARLPTARRAAELKAFLEDSVNFNTLSMVFNRSSRFARLQGVQCAMAGRNLYMRFSCCTGD 240
ARLPTARRAAELKAFLEDSVNFNTLSMVFNRSSRFARLQGVQCAMAGRNLYMRFSCCTGD
Sbjct: 181 ARLPTARRAAELKAFLEDSVNFNTLSMVFNRSSRFARLQGVQCAMAGRNLYMRFSCCTGD 240
Query: 241 AMGMNMVSKGVQNVLDYLQDDFPDMDVISISGNFCSDKKPAAVNWIEGRGKSVVCEAVIK 300
AMGMNMVSKGVQNVLDYLQDDFPDMDVISISGNFCSDKKPAAVNWIEGRGKSVVCEAVIK
Sbjct: 241 AMGMNMVSKGVQNVLDYLQDDFPDMDVISISGNFCSDKKPAAVNWIEGRGKSVVCEAVIK 300
Query: 301 EDVVKKVLKTNVQSLVELNVIKNXXXXXXXXXXXXFNAHASNIVTAIFIATGQDPAQNVE 360
EDVVKKVLKTNVQSLVELNVIKN FNAHASNIVTAIFIATGQDPAQNVE
Sbjct: 301 EDVVKKVLKTNVQSLVELNVIKNLAGSAVAGALGGFNAHASNIVTAIFIATGQDPAQNVE 360
Query: 361 SSHCITMLEAVNDGRDLHISVTMPSIEVGTVGGGTQLASQAACLDLLGVKGANRESPGSN 420
SSHCITMLEAVNDGRDLHISVTMPSIEVGTVGGGTQLASQAACLDLLGVKGANRESPGSN
Sbjct: 361 SSHCITMLEAVNDGRDLHISVTMPSIEVGTVGGGTQLASQAACLDLLGVKGANRESPGSN 420
Query: 421 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSHMKYNRSSKDMSKVIS 467
KSHMKYNRSSKDMSKVIS
Sbjct: 421 ARLLATVVAGGVLAGELSLLSALAAGQLVKSHMKYNRSSKDMSKVIS 467
>Os09g0492700 Similar to 3-hydroxy-3-methylglutaryl coenzyme A reductase (EC
1.1.1.34) (Fragment)
Length = 576
Score = 716 bits (1847), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/433 (81%), Positives = 374/433 (86%), Gaps = 2/433 (0%)
Query: 35 SLLGSPHDDAARERMPEEDEEIVSSVVAGKVPSYVLETKLGDCRRAAGIRREAVRRITGR 94
SLLGS AA ++MPEEDEEIV+ VVAGK+PSYVLET+LGDCRRAAGIRREA+RR TGR
Sbjct: 146 SLLGSAC--AAPKKMPEEDEEIVAEVVAGKIPSYVLETRLGDCRRAAGIRREALRRTTGR 203
Query: 95 QIEGLPLDGFDYASILGQCCELPVGYVQLPVGIAGPLLLDGQRFYVPMATTEGCLVASTN 154
+I GLPLDGFDYASILGQCCELPVGYVQLPVG+AGPL+LDG+RFYVPMATTEGCLVASTN
Sbjct: 204 EIRGLPLDGFDYASILGQCCELPVGYVQLPVGVAGPLVLDGERFYVPMATTEGCLVASTN 263
Query: 155 RGCKAIAESGGAVSVVLRDGMTRAPVARLPTARRAAELKAFLEDSVNFNTLSMVFNRSSR 214
RGCKAIAESGGA SVVL+DGMTRAPVAR P+ARRAAELK FLE+ NF+TL+MVFNRSSR
Sbjct: 264 RGCKAIAESGGATSVVLQDGMTRAPVARFPSARRAAELKGFLENPANFDTLAMVFNRSSR 323
Query: 215 FARLQGVQCAMAGRNLYMRFSCCTGDAMGMNMVSKGVQNVLDYLQDDFPDMDVISISGNF 274
FARLQ V+CA+AGRNLYMRFSC TGDAMGMNMVSKGVQNVLDYLQDDFPDMDVISISGNF
Sbjct: 324 FARLQRVKCAVAGRNLYMRFSCSTGDAMGMNMVSKGVQNVLDYLQDDFPDMDVISISGNF 383
Query: 275 CSDKKPAAVNWIEGRGKSVVCEAVIKEDVVKKVLKTNVQSLVELNVIKNXXXXXXXXXXX 334
CSDKK AAVNWIEGRGKSVVCEAVIKE+VVKKVLKTNVQSLVELNVIKN
Sbjct: 384 CSDKKSAAVNWIEGRGKSVVCEAVIKEEVVKKVLKTNVQSLVELNVIKNLAGSAVAGALG 443
Query: 335 XFNAHASNIVTAIFIATGQDPAQNVESSHCITMLEAVNDGRDLHISVTMPSIEVGTVGGG 394
FNAHASNIVTAIFIATGQDPAQNVESS CITMLEAVNDG+DLHISVTMPSIEVGTVGGG
Sbjct: 444 GFNAHASNIVTAIFIATGQDPAQNVESSQCITMLEAVNDGKDLHISVTMPSIEVGTVGGG 503
Query: 395 TQLASQAACLDLLGVKGANRESPGSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSHMK 454
TQLASQ+ACLDLLGVKGANRESPGSN +SHMK
Sbjct: 504 TQLASQSACLDLLGVKGANRESPGSNARLLAAVVAGAVLAGELSLISAQAAGHLVQSHMK 563
Query: 455 YNRSSKDMSKVIS 467
YNRSSKDMSKV S
Sbjct: 564 YNRSSKDMSKVAS 576
>AK110180
Length = 911
Score = 412 bits (1060), Expect = e-115, Method: Compositional matrix adjust.
Identities = 205/410 (50%), Positives = 274/410 (66%), Gaps = 4/410 (0%)
Query: 53 DEEIVSSVVAGKVPSYVLETKLGDCRRAAGIRREAVRRIT-GRQIEG--LPLDGFDYASI 109
DEEIV+ GK+ +Y LE L D RA +RR V R + + +E LP +DYA +
Sbjct: 433 DEEIVTLSQNGKIAAYALEKVLQDHERAVRVRRALVSRASHTKTLESSLLPHRDYDYAKV 492
Query: 110 LGQCCELPVGYVQLPVGIAGPLLLDGQRFYVPMATTEGCLVASTNRGCKAIAESGGAVSV 169
+G CCE VGY+ +PVGIAGPL +DGQ +PMATTEG LVAST+RGCKA+ GG +V
Sbjct: 493 MGACCENVVGYMPIPVGIAGPLNIDGQVMPIPMATTEGTLVASTSRGCKALNAGGGVTTV 552
Query: 170 VLRDGMTRAPVARLPTARRAAELKAFLEDSVNFNTLSMVFNRSSRFARLQGVQCAMAGRN 229
+ +D MTR P P+ +AA+ K +++ +T+ F+ +SRFARL ++C +AGR
Sbjct: 553 LTQDAMTRGPALEFPSVVQAAKAKRWIDSQDGASTIKAAFDSTSRFARLSSLRCVLAGRT 612
Query: 230 LYMRFSCCTGDAMGMNMVSKGVQNVLDYL-QDDFPDMDVISISGNFCSDKKPAAVNWIEG 288
LY+RF+ TGDAMGMNM+SKGV+ L + ++ FP+M V+S+SGN+C+DKKPAA+NWIEG
Sbjct: 613 LYVRFATSTGDAMGMNMISKGVEKALSLMTEEHFPEMKVLSLSGNYCTDKKPAAINWIEG 672
Query: 289 RGKSVVCEAVIKEDVVKKVLKTNVQSLVELNVIKNXXXXXXXXXXXXFNAHASNIVTAIF 348
RGKSVV EAV+ VVK VLK V+ LV LN KN FNAHA+NI+TAI+
Sbjct: 673 RGKSVVAEAVVPGSVVKSVLKCTVRDLVNLNTKKNLIGSAMAGSVGGFNAHAANILTAIY 732
Query: 349 IATGQDPAQNVESSHCITMLEAVNDGRDLHISVTMPSIEVGTVGGGTQLASQAACLDLLG 408
+ATGQDPAQNVESS+CIT++EA+ND +DL I+V+MPSIEVGTVGGGT L Q + L+++G
Sbjct: 733 LATGQDPAQNVESSNCITLMEAINDDQDLLITVSMPSIEVGTVGGGTVLPPQRSMLEMMG 792
Query: 409 VKGANRESPGSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSHMKYNRS 458
+ GA+ +PG+N ++HMK+NRS
Sbjct: 793 IAGAHATTPGANAQRLARIIAASVMAGELSLMGALCAGHLIQAHMKHNRS 842
>Os02g0713900 Similar to 3-hydroxy-3-methylglutaryl coenzyme A reductase (EC
1.1.1.34) (Fragment)
Length = 236
Score = 332 bits (851), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 164/236 (69%), Positives = 179/236 (75%)
Query: 232 MRFSCCTGDAMGMNMVSKGVQNVLDYLQDDFPDMDVISISGNFCSDKKPAAVNWIEGRGK 291
MRFSC TGDAMGMNMVSKGV+NVL YLQ+ FPDMDVIS+SGN+CSDKKP AVNWIEGRGK
Sbjct: 1 MRFSCITGDAMGMNMVSKGVENVLGYLQNVFPDMDVISVSGNYCSDKKPTAVNWIEGRGK 60
Query: 292 SVVCEAVIKEDVVKKVLKTNVQSLVELNVIKNXXXXXXXXXXXXFNAHASNIVTAIFIAT 351
SVVCEA+IK DVV+KVLKT V+ LVELN+IKN FNAHASNIVTA+FIAT
Sbjct: 61 SVVCEAIIKGDVVQKVLKTTVEKLVELNIIKNLAGSAVAGALGGFNAHASNIVTALFIAT 120
Query: 352 GQDPAQNVESSHCITMLEAVNDGRDLHISVTMPSIEVGTVGGGTQLASQAACLDLLGVKG 411
GQDPAQNVESS CITMLE VNDG DLHISVTMPSIEVGT+GGGT LASQAACL+LLGVKG
Sbjct: 121 GQDPAQNVESSQCITMLEEVNDGDDLHISVTMPSIEVGTIGGGTCLASQAACLNLLGVKG 180
Query: 412 ANRESPGSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSHMKYNRSSKDMSKVIS 467
+N SPG+N KSHM YNRSSKD++K S
Sbjct: 181 SNHGSPGANAKRLATIVAGSVLAGELSLLAALASGHLVKSHMMYNRSSKDVAKAAS 236
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.133 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,386,834
Number of extensions: 521328
Number of successful extensions: 1217
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1211
Number of HSP's successfully gapped: 4
Length of query: 467
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 363
Effective length of database: 11,605,545
Effective search space: 4212812835
Effective search space used: 4212812835
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)