Os02g0713900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 3-hydroxy-3-methylglutaryl coenzyme A reductase (EC 1.1.1.34) (Fragment).
FiT-DB / Search/ Help/ Sample detail
|
Os02g0713900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to 3-hydroxy-3-methylglutaryl coenzyme A reductase (EC 1.1.1.34) (Fragment).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 152.55 | 0.58 | 4.36 | 0.732 | 0.0105 | -0.375 | 0.836 | 1.8 | 0.34 | 11.8 | 20.2 | 830 | -- | -- |
| 156.4 | 0.582 | 4.4 | 0.527 | 0.033 | -0.961 | -0.308 | -- | 0.297 | 0.296 | 18.7 | 715 | -- | -- |
| 153.28 | 0.577 | 4.35 | 0.805 | 0.0632 | -0.355 | -- | 1.84 | 0.349 | 11.6 | 20.5 | 1353 | -- | -- |
| 156.91 | 0.583 | 4.4 | 0.531 | 0.0318 | -0.923 | -- | -- | 0.277 | 2.59 | 18.7 | 713 | -- | -- |
| 153.29 | 0.577 | 4.34 | 0.88 | -- | -0.308 | -- | 2.11 | 0.376 | -- | 20.7 | 1350 | -- | -- |
| 169.24 | 0.61 | 4.43 | 0.223 | 0.0949 | -- | 0.299 | -- | 0.154 | 10.1 | -- | -- | -- | -- |
| 169.51 | 0.61 | 4.43 | 0.234 | 0.104 | -- | -- | -- | 0.154 | 8.59 | -- | -- | -- | -- |
| 157.01 | 0.584 | 4.4 | 0.533 | -- | -0.915 | -- | -- | 0.278 | -- | 18.78 | 700 | -- | -- |
| 163.15 | 0.595 | 4.42 | -- | 0.0403 | -0.676 | -- | -- | 0.194 | 3.44 | 18.7 | 625 | -- | -- |
| 170.12 | 0.609 | 4.43 | 0.234 | -- | -- | -- | -- | 0.155 | -- | -- | -- | -- | -- |
| 170.95 | 0.612 | 4.43 | -- | 0.105 | -- | -- | -- | 0.128 | 8.42 | -- | -- | -- | -- |
| 163.23 | 0.595 | 4.42 | -- | -- | -0.68 | -- | -- | 0.195 | -- | 18.72 | 622 | -- | -- |
| 171.56 | 0.611 | 4.44 | -- | -- | -- | -- | -- | 0.129 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 149.57 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 12 |
| 4 | 150.16 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 5 | 150.22 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 8 | 150.48 | temperature | 20 | 720 | > th | dose independent | sin | 6 | NA |
| 11 | 150.61 | temperature | 20 | 720 | > th | dose independent | rect. | 20 | 17 |
| 16 | 150.79 | temperature | 20 | 720 | < th | dose independent | sin | 5 | NA |
| 23 | 150.94 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 17 |
| 46 | 151.28 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 20 |
| 50 | 151.36 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 15 |
| 54 | 151.40 | temperature | 20 | 720 | < th | dose independent | rect. | 19 | 17 |
| 64 | 151.45 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 18 |
| 92 | 151.62 | temperature | 20 | 720 | < th | dose independent | rect. | 2 | 9 |
| 96 | 151.64 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 7 |
| 321 | 152.84 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 342 | 152.93 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 343 | 152.93 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 7 |
| 351 | 152.95 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 12 |
| 352 | 152.96 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 8 |
| 388 | 153.11 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 1 |
| 398 | 153.14 | atmosphere | 1010 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 401 | 153.14 | temperature | 20 | 720 | < th | dose independent | rect. | 11 | 23 |
| 404 | 153.15 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 13 |
| 440 | 153.23 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 13 |
| 442 | 153.23 | temperature | 20 | 720 | > th | dose independent | rect. | 7 | 23 |
| 443 | 153.23 | temperature | 20 | 720 | > th | dose independent | rect. | 9 | 23 |
| 465 | 153.29 | atmosphere | 1010 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 470 | 153.30 | temperature | 20 | 4320 | > th | dose independent | sin | 13 | NA |
| 471 | 153.30 | temperature | 20 | 4320 | < th | dose independent | sin | 13 | NA |
| 479 | 153.31 | temperature | 20 | 4320 | > th | dose independent | rect. | 13 | 18 |
| 487 | 153.32 | temperature | 20 | 4320 | < th | dose independent | rect. | 12 | 19 |
| 501 | 153.35 | temperature | 20 | 720 | < th | dose independent | rect. | 7 | 23 |
| 503 | 153.36 | temperature | 20 | 4320 | > th | dose independent | rect. | 15 | 16 |
| 504 | 153.36 | temperature | 20 | 4320 | < th | dose independent | rect. | 15 | 16 |
| 533 | 153.42 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 23 |
| 552 | 153.46 | atmosphere | 1010 | 1440 | > th | dose independent | rect. | 9 | 2 |
| 574 | 153.49 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 23 |
| 673 | 153.64 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 744 | 153.73 | temperature | 20 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 751 | 153.73 | humidity | 50 | 43200 | < th | dose dependent | rect. | 20 | 8 |
| 819 | 153.83 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 1 |
| 820 | 153.83 | temperature | 20 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 988 | 154.03 | temperature | 20 | 30 | > th | dose independent | rect. | 12 | 18 |