BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0713900 Os02g0713900|AK069555
(236 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0713900 Similar to 3-hydroxy-3-methylglutaryl coenzyme... 414 e-116
Os08g0512700 Similar to 3-hydroxy-3-methylglutaryl coenzyme... 346 1e-95
Os09g0492700 Similar to 3-hydroxy-3-methylglutaryl coenzyme... 338 3e-93
AK110180 262 2e-70
>Os02g0713900 Similar to 3-hydroxy-3-methylglutaryl coenzyme A reductase (EC
1.1.1.34) (Fragment)
Length = 236
Score = 414 bits (1065), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/236 (87%), Positives = 206/236 (87%)
Query: 1 MRFSCITGDAMGMNMVSKGVENVLGYLQNVFPDMDVISVSGNYCSDKKPTAVNWIEGRGK 60
MRFSCITGDAMGMNMVSKGVENVLGYLQNVFPDMDVISVSGNYCSDKKPTAVNWIEGRGK
Sbjct: 1 MRFSCITGDAMGMNMVSKGVENVLGYLQNVFPDMDVISVSGNYCSDKKPTAVNWIEGRGK 60
Query: 61 SVVCEAIIKGDVVQKVLKTTVEKLVELNIIKNXXXXXXXXXXXXFNAHASNIVTALFIAT 120
SVVCEAIIKGDVVQKVLKTTVEKLVELNIIKN FNAHASNIVTALFIAT
Sbjct: 61 SVVCEAIIKGDVVQKVLKTTVEKLVELNIIKNLAGSAVAGALGGFNAHASNIVTALFIAT 120
Query: 121 GQDPAQNVESSQCITMLEEVNDGDDLHISVTMPSIEVGTIGGGTCLASQAACLNLLGVKG 180
GQDPAQNVESSQCITMLEEVNDGDDLHISVTMPSIEVGTIGGGTCLASQAACLNLLGVKG
Sbjct: 121 GQDPAQNVESSQCITMLEEVNDGDDLHISVTMPSIEVGTIGGGTCLASQAACLNLLGVKG 180
Query: 181 SNHGSPGANAKRLATIVXXXXXXXXXXXXXXXXXXHLVKSHMMYNRSSKDVAKAAS 236
SNHGSPGANAKRLATIV HLVKSHMMYNRSSKDVAKAAS
Sbjct: 181 SNHGSPGANAKRLATIVAGSVLAGELSLLAALASGHLVKSHMMYNRSSKDVAKAAS 236
>Os08g0512700 Similar to 3-hydroxy-3-methylglutaryl coenzyme A reductase (EC
1.1.1.34) (Fragment)
Length = 467
Score = 346 bits (887), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 171/236 (72%), Positives = 188/236 (79%)
Query: 1 MRFSCITGDAMGMNMVSKGVENVLGYLQNVFPDMDVISVSGNYCSDKKPTAVNWIEGRGK 60
MRFSC TGDAMGMNMVSKGV+NVL YLQ+ FPDMDVIS+SGN+CSDKKP AVNWIEGRGK
Sbjct: 232 MRFSCCTGDAMGMNMVSKGVQNVLDYLQDDFPDMDVISISGNFCSDKKPAAVNWIEGRGK 291
Query: 61 SVVCEAIIKGDVVQKVLKTTVEKLVELNIIKNXXXXXXXXXXXXFNAHASNIVTALFIAT 120
SVVCEA+IK DVV+KVLKT V+ LVELN+IKN FNAHASNIVTA+FIAT
Sbjct: 292 SVVCEAVIKEDVVKKVLKTNVQSLVELNVIKNLAGSAVAGALGGFNAHASNIVTAIFIAT 351
Query: 121 GQDPAQNVESSQCITMLEEVNDGDDLHISVTMPSIEVGTIGGGTCLASQAACLNLLGVKG 180
GQDPAQNVESS CITMLE VNDG DLHISVTMPSIEVGT+GGGT LASQAACL+LLGVKG
Sbjct: 352 GQDPAQNVESSHCITMLEAVNDGRDLHISVTMPSIEVGTVGGGTQLASQAACLDLLGVKG 411
Query: 181 SNHGSPGANAKRLATIVXXXXXXXXXXXXXXXXXXHLVKSHMMYNRSSKDVAKAAS 236
+N SPG+NA+ LAT+V LVKSHM YNRSSKD++K S
Sbjct: 412 ANRESPGSNARLLATVVAGGVLAGELSLLSALAAGQLVKSHMKYNRSSKDMSKVIS 467
>Os09g0492700 Similar to 3-hydroxy-3-methylglutaryl coenzyme A reductase (EC
1.1.1.34) (Fragment)
Length = 576
Score = 338 bits (866), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 169/236 (71%), Positives = 189/236 (80%)
Query: 1 MRFSCITGDAMGMNMVSKGVENVLGYLQNVFPDMDVISVSGNYCSDKKPTAVNWIEGRGK 60
MRFSC TGDAMGMNMVSKGV+NVL YLQ+ FPDMDVIS+SGN+CSDKK AVNWIEGRGK
Sbjct: 341 MRFSCSTGDAMGMNMVSKGVQNVLDYLQDDFPDMDVISISGNFCSDKKSAAVNWIEGRGK 400
Query: 61 SVVCEAIIKGDVVQKVLKTTVEKLVELNIIKNXXXXXXXXXXXXFNAHASNIVTALFIAT 120
SVVCEA+IK +VV+KVLKT V+ LVELN+IKN FNAHASNIVTA+FIAT
Sbjct: 401 SVVCEAVIKEEVVKKVLKTNVQSLVELNVIKNLAGSAVAGALGGFNAHASNIVTAIFIAT 460
Query: 121 GQDPAQNVESSQCITMLEEVNDGDDLHISVTMPSIEVGTIGGGTCLASQAACLNLLGVKG 180
GQDPAQNVESSQCITMLE VNDG DLHISVTMPSIEVGT+GGGT LASQ+ACL+LLGVKG
Sbjct: 461 GQDPAQNVESSQCITMLEAVNDGKDLHISVTMPSIEVGTVGGGTQLASQSACLDLLGVKG 520
Query: 181 SNHGSPGANAKRLATIVXXXXXXXXXXXXXXXXXXHLVKSHMMYNRSSKDVAKAAS 236
+N SPG+NA+ LA +V HLV+SHM YNRSSKD++K AS
Sbjct: 521 ANRESPGSNARLLAAVVAGAVLAGELSLISAQAAGHLVQSHMKYNRSSKDMSKVAS 576
>AK110180
Length = 911
Score = 262 bits (669), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 124/228 (54%), Positives = 161/228 (70%), Gaps = 1/228 (0%)
Query: 1 MRFSCITGDAMGMNMVSKGVENVLGYL-QNVFPDMDVISVSGNYCSDKKPTAVNWIEGRG 59
+RF+ TGDAMGMNM+SKGVE L + + FP+M V+S+SGNYC+DKKP A+NWIEGRG
Sbjct: 615 VRFATSTGDAMGMNMISKGVEKALSLMTEEHFPEMKVLSLSGNYCTDKKPAAINWIEGRG 674
Query: 60 KSVVCEAIIKGDVVQKVLKTTVEKLVELNIIKNXXXXXXXXXXXXFNAHASNIVTALFIA 119
KSVV EA++ G VV+ VLK TV LV LN KN FNAHA+NI+TA+++A
Sbjct: 675 KSVVAEAVVPGSVVKSVLKCTVRDLVNLNTKKNLIGSAMAGSVGGFNAHAANILTAIYLA 734
Query: 120 TGQDPAQNVESSQCITMLEEVNDGDDLHISVTMPSIEVGTIGGGTCLASQAACLNLLGVK 179
TGQDPAQNVESS CIT++E +ND DL I+V+MPSIEVGT+GGGT L Q + L ++G+
Sbjct: 735 TGQDPAQNVESSNCITLMEAINDDQDLLITVSMPSIEVGTVGGGTVLPPQRSMLEMMGIA 794
Query: 180 GSNHGSPGANAKRLATIVXXXXXXXXXXXXXXXXXXHLVKSHMMYNRS 227
G++ +PGANA+RLA I+ HL+++HM +NRS
Sbjct: 795 GAHATTPGANAQRLARIIAASVMAGELSLMGALCAGHLIQAHMKHNRS 842
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.131 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,618,093
Number of extensions: 232816
Number of successful extensions: 542
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 537
Number of HSP's successfully gapped: 4
Length of query: 236
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 138
Effective length of database: 11,918,829
Effective search space: 1644798402
Effective search space used: 1644798402
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 154 (63.9 bits)