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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0512700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to 3-hydroxy-3-methylglutaryl coenzyme A reductase (EC 1.1.1.34) (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.14 (0.344) R2 : 0.509
β1 : 18 (3.18) R2dD : 7.42 R2D : -10.8
β2 : 1.74 (0.167) R2dC : 0.134 R2C : -1.58
β3 : -19.9 (3.43) R2dE : 13.1 R2E : -18
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 206 (32.2) R2dD*E : 23.8 R2D*E : -16.8
γ1 : 0.0101 (0.131) R2dN8 : 1.14e-05 R2N8 : -1.85
σ : 1.13
deviance : 589.16
__
_____
C
peak time of C : 4.63
E
wheather : temperature
threshold : 30.2
memory length : 760
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18
open length of G : 6.99

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
586.79 1.14 2.14 18 1.73 -19.8 -0.967 206 0.00911 4.57 30.2 757 18 5.01
787.34 1.32 4.35 -2.02 2.46 1.18 0.579 -- -0.234 4.67 30.2 757 18 5.01
589.16 1.13 2.14 18 1.74 -19.9 -- 206 0.0101 4.63 30.2 760 18 6.99
605.25 1.15 4.36 -2.4 1.6 2.51 -- -- -0.242 5.39 25.77 797 17.8 5.22
734.38 1.26 1.96 19.5 -- -20.3 -- 215 0.139 -- 30.19 863 18 8.53
791.17 1.32 4.36 -2.01 2.42 -- 0.482 -- -0.245 4.63 -- -- -- --
791.78 1.32 4.36 -2.01 2.42 -- -- -- -0.248 4.61 -- -- -- --
686.19 1.22 4.45 -2.48 -- 3.24 -- -- -0.51 -- 24.71 789 18.3 5.25
753.77 1.28 4.28 -- 1.67 2.22 -- -- 0.0974 5.27 25.89 767 17.8 5.37
1103.47 1.55 4.38 -1.92 -- -- -- -- -0.184 -- -- -- -- --
898.16 1.4 4.31 -- 2.38 -- -- -- -0.0241 4.64 -- -- -- --
832.52 1.34 4.39 -- -- 3.13 -- -- -0.169 -- 25.1 717 20 2.96
1200.33 1.62 4.33 -- -- -- -- -- 0.0282 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 592.91 temperature 30.0 720 > th dose dependent rect. 18 1
29 597.46 wind 1.0 90 < th dose independent rect. 4 1
33 604.15 wind 1.0 270 < th dose dependent rect. 4 1
34 605.87 humidity 50.0 1440 < th dose independent rect. 16 1
35 606.17 humidity 90.0 720 < th dose dependent rect. 18 5
36 607.08 humidity 50.0 1440 < th dose dependent rect. 16 1
38 608.84 humidity 70.0 720 > th dose independent rect. 19 8
47 614.66 humidity 70.0 720 < th dose independent rect. 18 13
48 614.68 humidity 70.0 720 < th dose independent rect. 18 2
60 614.84 humidity 80.0 720 < th dose dependent rect. 18 1
80 617.14 temperature 25.0 720 > th dose dependent rect. 21 2
86 619.27 temperature 25.0 90 < th dose independent rect. 4 1
140 623.70 wind 3.0 10 < th dose dependent rect. 4 2
146 624.79 temperature 30.0 720 > th dose independent rect. 18 1
163 626.17 humidity 90.0 90 > th dose independent rect. 4 1
164 626.25 temperature 20.0 90 > th dose independent rect. 4 1
167 626.52 humidity 90.0 90 > th dose dependent rect. 4 1
169 627.05 humidity 50.0 1440 > th dose independent rect. 16 1
194 628.86 temperature 20.0 90 > th dose dependent rect. 4 1
232 631.99 humidity 80.0 720 > th dose dependent rect. 21 2
237 632.32 humidity 50.0 720 > th dose dependent rect. 17 8
245 632.51 humidity 80.0 1440 < th dose dependent rect. 16 16
288 633.14 atmosphere 1015.0 90 < th dose dependent rect. 4 1
301 633.72 temperature 20.0 10 > th dose dependent rect. 4 2
323 634.47 temperature 20.0 90 > th dose dependent rect. 3 3
328 634.93 humidity 70.0 1440 > th dose independent rect. 18 2
332 635.02 humidity 70.0 1440 > th dose independent rect. 18 5
342 635.68 temperature 30.0 1440 < th dose independent rect. 18 8
362 636.10 temperature 30.0 1440 < th dose independent rect. 18 11
429 637.38 temperature 30.0 1440 < th dose independent rect. 18 14
442 637.84 humidity 70.0 1440 < th dose independent sin 12 NA
443 637.88 radiation 20.0 1440 < th dose dependent rect. 18 10
475 638.85 temperature 30.0 1440 < th dose independent rect. 18 2
501 639.89 humidity 80.0 1440 < th dose dependent sin 13 NA
507 640.20 temperature 20.0 10 > th dose independent rect. 4 2
545 641.40 radiation 1.0 720 > th dose independent rect. 18 1
655 643.41 humidity 60.0 1440 > th dose independent rect. 16 3
672 643.87 humidity 60.0 1440 > th dose independent rect. 16 12
693 643.93 temperature 30.0 1440 > th dose dependent sin 12 NA
729 644.63 humidity 60.0 1440 > th dose independent rect. 16 16
737 644.77 wind 9.0 90 < th dose independent rect. 5 23
743 644.99 radiation 1.0 90 < th dose independent rect. 4 1
753 645.13 radiation 10.0 90 < th dose dependent rect. 4 1
776 645.35 precipitation 0.1 90 < th dose independent rect. 4 1
778 645.35 precipitation 0.1 90 < th dose dependent rect. 4 1
789 645.49 wind 7.0 90 < th dose independent rect. 4 1
791 645.49 temperature 10.0 90 > th dose independent rect. 4 1
794 645.49 humidity 50.0 90 > th dose independent rect. 4 1
797 645.49 atmosphere 995.0 90 > th dose independent rect. 4 1
798 645.49 atmosphere 1010.0 90 < th dose independent rect. 4 1
803 645.49 temperature 10.0 90 > th dose independent rect. 5 23
934 647.43 humidity 70.0 1440 > th dose independent sin 12 NA
950 647.98 wind 1.0 90 < th dose dependent rect. 4 13
959 648.14 radiation 30.0 1440 > th dose independent rect. 16 16