Os09g0492700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 3-hydroxy-3-methylglutaryl coenzyme A reductase (EC 1.1.1.34) (Fragment).
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Os09g0492700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 3-hydroxy-3-methylglutaryl coenzyme A reductase (EC 1.1.1.34) (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 77.55 | 0.414 | 8.7 | 1.18 | 1.47 | -1.07 | 0.296 | 2.17 | 0.667 | 21.8 | 25.51 | 10840 | -- | -- |
| 77.5 | 0.41 | 8.73 | 1.23 | 1.44 | -1.27 | 0.446 | -- | 0.717 | 21.8 | 22.89 | 31489 | -- | -- |
| 76.29 | 0.407 | 8.66 | 1.35 | 1.45 | -1.07 | -- | 2.18 | 0.84 | 21.7 | 26.4 | 12982 | -- | -- |
| 77.36 | 0.41 | 8.74 | 1.39 | 1.44 | -1.4 | -- | -- | 0.768 | 21.8 | 22.85 | 35531 | -- | -- |
| 197.15 | 0.654 | 8.61 | 1.31 | -- | -1.03 | -- | 2.24 | 0.868 | -- | 27.34 | 13028 | -- | -- |
| 111.8 | 0.496 | 8.89 | -0.0476 | 1.42 | -- | 0.282 | -- | 0.0962 | 21.7 | -- | -- | -- | -- |
| 112.09 | 0.496 | 8.89 | -0.0583 | 1.42 | -- | -- | -- | 0.0957 | 21.7 | -- | -- | -- | -- |
| 197.04 | 0.657 | 8.79 | 0.24 | -- | -0.695 | -- | -- | 0.34 | -- | 22.85 | 35531 | -- | -- |
| 84.83 | 0.429 | 8.82 | -- | 1.41 | -0.77 | -- | -- | 0.4 | 21.8 | 26.25 | 7430 | -- | -- |
| 231.26 | 0.711 | 8.85 | -0.0462 | -- | -- | -- | -- | 0.0933 | -- | -- | -- | -- | -- |
| 112.18 | 0.495 | 8.88 | -- | 1.42 | -- | -- | -- | 0.102 | 21.7 | -- | -- | -- | -- |
| 195.4 | 0.653 | 8.8 | -- | -- | -0.683 | -- | -- | 0.318 | -- | 23.03 | 5953 | -- | -- |
| 231.32 | 0.71 | 8.85 | -- | -- | -- | -- | -- | 0.0984 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 74.18 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 2 |
| 3 | 74.20 | temperature | 20 | 14400 | > th | dose dependent | rect. | 4 | 1 |
| 24 | 74.62 | temperature | 25 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 31 | 74.66 | temperature | 25 | 14400 | > th | dose independent | rect. | 18 | 2 |
| 32 | 74.68 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 48 | 74.82 | temperature | 25 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 53 | 74.86 | temperature | 25 | 14400 | > th | dose dependent | rect. | 11 | 10 |
| 61 | 74.90 | temperature | 25 | 14400 | > th | dose dependent | rect. | 13 | 8 |
| 64 | 74.91 | temperature | 25 | 14400 | < th | dose independent | rect. | 17 | 6 |
| 75 | 74.93 | temperature | 25 | 14400 | > th | dose dependent | sin | 20 | NA |
| 134 | 74.99 | temperature | 25 | 14400 | > th | dose dependent | rect. | 9 | 7 |
| 145 | 75.00 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 179 | 75.03 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 347 | 75.17 | temperature | 25 | 14400 | > th | dose dependent | no | NA | NA |
| 363 | 75.19 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 23 |
| 493 | 75.53 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 545 | 75.70 | temperature | 20 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 565 | 75.76 | temperature | 20 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 575 | 75.78 | temperature | 20 | 14400 | > th | dose dependent | sin | 10 | NA |
| 672 | 75.89 | temperature | 25 | 14400 | < th | dose independent | rect. | 17 | 18 |
| 683 | 75.91 | temperature | 25 | 14400 | > th | dose independent | rect. | 17 | 18 |
| 687 | 75.92 | temperature | 25 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 811 | 76.12 | temperature | 20 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 845 | 76.17 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 918 | 76.28 | temperature | 20 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 919 | 76.28 | temperature | 25 | 14400 | < th | dose independent | rect. | 8 | 2 |
| 956 | 76.33 | humidity | 90 | 43200 | > th | dose dependent | sin | 16 | NA |
| 964 | 76.34 | temperature | 30 | 14400 | < th | dose independent | rect. | 13 | 18 |
| 977 | 76.35 | temperature | 30 | 14400 | < th | dose independent | rect. | 13 | 14 |
| 990 | 76.36 | temperature | 20 | 43200 | > th | dose independent | rect. | 22 | 8 |