BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0512300 Os08g0512300|AK102273
(319 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0512300 Similar to Rab geranylgeranyl transferase beta... 655 0.0
Os11g0523500 174 1e-43
Os03g0193700 Terpenoid cylases/protein prenyltransferase al... 114 1e-25
Os01g0150100 Similar to Geranylgeranyltransferase beta subunit 111 8e-25
Os01g0737800 Similar to Protein farnesyltransferase beta su... 101 6e-22
>Os08g0512300 Similar to Rab geranylgeranyl transferase beta subunit (Fragment)
Length = 319
Score = 655 bits (1690), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/319 (100%), Positives = 319/319 (100%)
Query: 1 MGDGGELAAEKHVRYIVTVEKRKDSFESLVMEHIRLNGAYWGLTTLDLLHKLRAVEADEV 60
MGDGGELAAEKHVRYIVTVEKRKDSFESLVMEHIRLNGAYWGLTTLDLLHKLRAVEADEV
Sbjct: 1 MGDGGELAAEKHVRYIVTVEKRKDSFESLVMEHIRLNGAYWGLTTLDLLHKLRAVEADEV 60
Query: 61 IEWIMSCYHPESGGFGGNVGHDAHVLYTLSAVQVLCLFDRLDALDVDKVADYIAGLQNED 120
IEWIMSCYHPESGGFGGNVGHDAHVLYTLSAVQVLCLFDRLDALDVDKVADYIAGLQNED
Sbjct: 61 IEWIMSCYHPESGGFGGNVGHDAHVLYTLSAVQVLCLFDRLDALDVDKVADYIAGLQNED 120
Query: 121 GSFSGDIWGEVDTRFSYIAICTLSLLHRLEKINVQKAVDYIVSCKNLDGGFGAMPGGESH 180
GSFSGDIWGEVDTRFSYIAICTLSLLHRLEKINVQKAVDYIVSCKNLDGGFGAMPGGESH
Sbjct: 121 GSFSGDIWGEVDTRFSYIAICTLSLLHRLEKINVQKAVDYIVSCKNLDGGFGAMPGGESH 180
Query: 181 AGQIFCCVGALAITGSLHHIDRDLLGWWLCERQCKEGGLNGRPEKLADVCYSWWVLSSLI 240
AGQIFCCVGALAITGSLHHIDRDLLGWWLCERQCKEGGLNGRPEKLADVCYSWWVLSSLI
Sbjct: 181 AGQIFCCVGALAITGSLHHIDRDLLGWWLCERQCKEGGLNGRPEKLADVCYSWWVLSSLI 240
Query: 241 MIDRVHWIDKDKLAKFILNCQDKENGGISDRPDNAVDIYHTYFGVAGLSLMEYPGVKPMD 300
MIDRVHWIDKDKLAKFILNCQDKENGGISDRPDNAVDIYHTYFGVAGLSLMEYPGVKPMD
Sbjct: 241 MIDRVHWIDKDKLAKFILNCQDKENGGISDRPDNAVDIYHTYFGVAGLSLMEYPGVKPMD 300
Query: 301 PAYALPLDVVNRIFLRKEH 319
PAYALPLDVVNRIFLRKEH
Sbjct: 301 PAYALPLDVVNRIFLRKEH 319
>Os11g0523500
Length = 187
Score = 174 bits (440), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 96/145 (66%), Positives = 101/145 (69%), Gaps = 36/145 (24%)
Query: 6 ELAAEKHVRYIVTVEK------------------------------RKDSFESLVMEHIR 35
ELAAEKHVRYIVT+EK +KDSFESLVMEHIR
Sbjct: 4 ELAAEKHVRYIVTMEKVGRLSLGCELLDAAADSDWMLFAAAAAVMQKKDSFESLVMEHIR 63
Query: 36 LNGAYWGLTTLDLLHKLRAVEADEVIEWIMSCYHPESGG------FGGNVGHDAHVLYTL 89
LNGAYWGLTTLDLLHKL AVEADE IEWIMSCYHP+SG +GGNVGHDAHVLYTL
Sbjct: 64 LNGAYWGLTTLDLLHKLHAVEADEFIEWIMSCYHPDSGSARRGVDWGGNVGHDAHVLYTL 123
Query: 90 SAVQVLCLFDRLDALDVDKVADYIA 114
SA QVLCLFDRLDALDVDK I+
Sbjct: 124 SAGQVLCLFDRLDALDVDKTPSRIS 148
>Os03g0193700 Terpenoid cylases/protein prenyltransferase alpha-alpha toroid
domain containing protein
Length = 149
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/97 (63%), Positives = 64/97 (65%), Gaps = 30/97 (30%)
Query: 5 GELAAEKHVRYIVTVEK------------------------------RKDSFESLVMEHI 34
GELAAEKHVRYIVTVEK +KDSFESLVMEHI
Sbjct: 41 GELAAEKHVRYIVTVEKVGRLSLGCELLDAAADSDWMLFAAAAAAVMQKDSFESLVMEHI 100
Query: 35 RLNGAYWGLTTLDLLHKLRAVEADEVIEWIMSCYHPE 71
RLNGAYWGLTTLDLLHKL AVEADE I WIMSCYHP+
Sbjct: 101 RLNGAYWGLTTLDLLHKLHAVEADEFIGWIMSCYHPD 137
>Os01g0150100 Similar to Geranylgeranyltransferase beta subunit
Length = 189
Score = 111 bits (277), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 84/159 (52%), Gaps = 13/159 (8%)
Query: 139 AICTLSLLHRLEKINVQKAVDYIVSCKNLDGGFGAMPGGESHAGQIFCCVGALAITGSLH 198
AIC S+L ++ +KA YI+SC++ DGGFG +PG ESH G FC V AL + G +
Sbjct: 9 AIC--SMLKDWTGMDKEKAKQYILSCQSYDGGFGLVPGSESHGGGTFCAVAALCLMGFIQ 66
Query: 199 -----------HIDRDLLGWWLCERQCKEGGLNGRPEKLADVCYSWWVLSSLIMIDRVHW 247
ID LL W +RQ +GG GR K +D CY++W+ L +I +
Sbjct: 67 VDLASNLQEPSSIDVRLLLEWCLQRQAADGGFQGRRNKSSDTCYAFWIGGVLKIIGAYRF 126
Query: 248 IDKDKLAKFILNCQDKENGGISDRPDNAVDIYHTYFGVA 286
ID L F+L CQ G D DIYH+Y+G+A
Sbjct: 127 IDHGALRSFLLYCQSPYGGFTKFLYDQFPDIYHSYYGLA 165
>Os01g0737800 Similar to Protein farnesyltransferase beta subunit (EC 2.5.1.58)
(CAAX farnesyltransferase beta subunit) (RAS proteins
prenyltransferase beta) (FTase-beta)
Length = 478
Score = 101 bits (252), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 92/358 (25%), Positives = 157/358 (43%), Gaps = 57/358 (15%)
Query: 6 ELAAEKHVRYIVT-VEKRKDSFESLVMEHIRLNGAYWGLTTLDLLHKLRAVEADEVIEWI 64
EL E+HV Y+ ++ SF V++ R YW + L LL ++ D++++++
Sbjct: 95 ELWREQHVEYLTRGLKHLGPSFH--VLDANRPWLCYWIIHALALLDEIPDDVEDDIVDFL 152
Query: 65 MSCYHPESGGFGGNVGHDAHVLYTLSAVQVLCLFDR---LDALDVDKVADYIAGLQNEDG 121
C + GG+GG G H+ T +AV L L +++ D + ++ +++ G
Sbjct: 153 SRC-QDKDGGYGGGPGQLPHLATTYAAVNTLVTIGSERALSSVNRDNLYKFMLRMKDTSG 211
Query: 122 SFSGDIWGEVDTRFSYIAICTLSLLHRLEKINVQKAVDYIVSCKNLDGGFGAMPGGESHA 181
+F GE+D R SY AI SL++ L+ + +YI C+ +GG P E+H
Sbjct: 212 AFRMHDGGEIDVRASYTAISVASLVNILDGELAKGVGNYITRCQTYEGGIAGEPYAEAHG 271
Query: 182 GQIFCCVGALAITGSLHHIDRDLLGWWLCERQCKEGGLNGRPEKLADVCYSWWVLSSLIM 241
G FC + + + + +D L W+ RQ E G GR KL D CYS+W ++L +
Sbjct: 272 GYTFCGLATMILLNEVDKLDLASLIGWVAFRQGVECGFQGRTNKLVDGCYSFWQGAALAL 331
Query: 242 IDRVH---------------------------------------WIDKDK---------- 252
++ +I+K
Sbjct: 332 TQKLMTVVDEQLKSSYSSKRPPGDDACGTSSSTEAAYYAKFGFDFIEKSNQIGPLFHNIA 391
Query: 253 LAKFILNCQDKENGGISDRPDNAVDIYHTYFGVAGLSLMEYPGVKPMDPAYALPLDVV 310
L ++IL C +GG+ D+P D YH+ + ++GLS+ +Y + D A LP V+
Sbjct: 392 LQQYILLCAQVLDGGLRDKPGKNRDHYHSCYCLSGLSVSQYSAMVDSD-ACPLPQHVL 448
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.141 0.452
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,076,742
Number of extensions: 539386
Number of successful extensions: 1019
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 994
Number of HSP's successfully gapped: 5
Length of query: 319
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 218
Effective length of database: 11,762,187
Effective search space: 2564156766
Effective search space used: 2564156766
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)