Os08g0512300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Rab geranylgeranyl transferase beta subunit (Fragment).
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Os08g0512300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Rab geranylgeranyl transferase beta subunit (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16.56 | 0.191 | 9.54 | -0.201 | 0.589 | -0.508 | -0.0411 | 0.436 | 0.00414 | 0.858 | 21.9 | 1428 | -- | -- |
| 16.73 | 0.19 | 9.53 | -0.171 | 0.574 | -0.601 | -0.019 | -- | 0.00664 | 0.829 | 21.9 | 1417 | -- | -- |
| 16.56 | 0.19 | 9.54 | -0.2 | 0.585 | -0.498 | -- | 0.455 | 0.00457 | 0.855 | 21.95 | 1373 | -- | -- |
| 16.71 | 0.19 | 9.54 | -0.163 | 0.59 | -0.614 | -- | -- | 0.00965 | 0.847 | 21.8 | 1440 | -- | -- |
| 37.13 | 0.284 | 9.55 | -0.301 | -- | -0.464 | -- | 0.566 | -0.0584 | -- | 25.8 | 2402 | -- | -- |
| 19.86 | 0.209 | 9.52 | 0.000635 | 0.598 | -- | -0.0573 | -- | 0.0899 | 0.925 | -- | -- | -- | -- |
| 19.87 | 0.209 | 9.52 | 0.00275 | 0.598 | -- | -- | -- | 0.0903 | 0.911 | -- | -- | -- | -- |
| 35.12 | 0.276 | 9.53 | -0.178 | -- | -0.754 | -- | -- | -0.013 | -- | 22.69 | 892 | -- | -- |
| 17.2 | 0.194 | 9.53 | -- | 0.656 | -0.501 | -- | -- | 0.0502 | 0.918 | 21.8 | 1440 | -- | -- |
| 42.17 | 0.303 | 9.51 | 0.0249 | -- | -- | -- | -- | 0.102 | -- | -- | -- | -- | -- |
| 19.87 | 0.209 | 9.52 | -- | 0.598 | -- | -- | -- | 0.09 | 0.911 | -- | -- | -- | -- |
| 35.55 | 0.278 | 9.53 | -- | -- | -0.602 | -- | -- | -0.0152 | -- | 25.8 | 898 | -- | -- |
| 42.19 | 0.303 | 9.51 | -- | -- | -- | -- | -- | 0.0988 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.06 | humidity | 90 | 4320 | > th | dose dependent | rect. | 7 | 3 |
| 4 | 16.17 | humidity | 90 | 14400 | > th | dose dependent | rect. | 1 | 20 |
| 14 | 16.26 | humidity | 90 | 4320 | > th | dose dependent | rect. | 7 | 6 |
| 20 | 16.27 | temperature | 20 | 720 | > th | dose independent | rect. | 15 | 14 |
| 24 | 16.27 | humidity | 90 | 14400 | > th | dose dependent | rect. | 12 | 22 |
| 26 | 16.28 | wind | 5 | 43200 | < th | dose dependent | rect. | 23 | 7 |
| 28 | 16.28 | humidity | 90 | 14400 | > th | dose dependent | rect. | 14 | 20 |
| 35 | 16.28 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 23 |
| 40 | 16.29 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 47 | 16.29 | humidity | 90 | 14400 | > th | dose dependent | rect. | 17 | 23 |
| 51 | 16.30 | wind | 1 | 43200 | > th | dose dependent | rect. | 23 | 7 |
| 57 | 16.30 | humidity | 90 | 14400 | > th | dose dependent | rect. | 9 | 23 |
| 59 | 16.31 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 11 |
| 63 | 16.31 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 6 |
| 99 | 16.34 | temperature | 20 | 720 | > th | dose independent | sin | 13 | NA |
| 101 | 16.34 | radiation | 20 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 133 | 16.35 | humidity | 90 | 14400 | > th | dose dependent | sin | 3 | NA |
| 155 | 16.37 | wind | 5 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 168 | 16.38 | humidity | 90 | 14400 | > th | dose dependent | sin | 15 | NA |
| 174 | 16.38 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 10 |
| 183 | 16.39 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 18 |
| 186 | 16.39 | wind | 5 | 43200 | < th | dose dependent | rect. | 1 | 2 |
| 193 | 16.39 | humidity | 90 | 14400 | > th | dose dependent | rect. | 12 | 16 |
| 206 | 16.40 | humidity | 80 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 229 | 16.41 | humidity | 90 | 14400 | > th | dose dependent | rect. | 15 | 12 |
| 240 | 16.42 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 9 |
| 245 | 16.42 | wind | 1 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 301 | 16.45 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 302 | 16.45 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 2 |
| 371 | 16.49 | radiation | 30 | 4320 | < th | dose independent | rect. | 3 | 5 |
| 385 | 16.50 | radiation | 30 | 4320 | < th | dose independent | rect. | 5 | 3 |
| 411 | 16.51 | radiation | 30 | 4320 | < th | dose independent | rect. | 18 | 14 |
| 436 | 16.52 | radiation | 30 | 4320 | < th | dose independent | rect. | 20 | 12 |
| 484 | 16.55 | temperature | 20 | 1440 | < th | dose independent | sin | 14 | NA |
| 487 | 16.55 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 16 |
| 494 | 16.55 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 19 |
| 513 | 16.56 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 16 |
| 533 | 16.57 | humidity | 90 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 540 | 16.57 | temperature | 20 | 1440 | < th | dose independent | rect. | 17 | 14 |
| 549 | 16.57 | temperature | 20 | 720 | > th | dose independent | rect. | 8 | 19 |
| 566 | 16.58 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 16 |
| 587 | 16.59 | wind | 3 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 667 | 16.61 | humidity | 90 | 14400 | > th | dose independent | rect. | 3 | 7 |
| 710 | 16.62 | humidity | 90 | 4320 | > th | dose independent | rect. | 7 | 3 |
| 732 | 16.62 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 753 | 16.63 | radiation | 20 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 778 | 16.63 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 19 |
| 804 | 16.64 | wind | 3 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 867 | 16.65 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 21 |
| 877 | 16.65 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 886 | 16.66 | wind | 1 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 887 | 16.66 | humidity | 90 | 4320 | > th | dose independent | rect. | 12 | 2 |
| 888 | 16.66 | humidity | 90 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 940 | 16.67 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 990 | 16.68 | wind | 3 | 43200 | < th | dose independent | rect. | 22 | 10 |