BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0512300 Os08g0512300|AK102273
(319 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G12210.1 | chr5:3947254-3949595 FORWARD LENGTH=322 495 e-140
AT3G12070.1 | chr3:3845420-3847140 REVERSE LENGTH=318 495 e-140
AT2G39550.1 | chr2:16501666-16504144 FORWARD LENGTH=376 146 1e-35
AT5G40280.1 | chr5:16101391-16104783 FORWARD LENGTH=483 97 1e-20
>AT5G12210.1 | chr5:3947254-3949595 FORWARD LENGTH=322
Length = 321
Score = 495 bits (1274), Expect = e-140, Method: Compositional matrix adjust.
Identities = 241/312 (77%), Positives = 276/312 (88%), Gaps = 1/312 (0%)
Query: 6 ELAAEKHVRYIVTVEKRKDSFESLVMEHIRLNGAYWGLTTLDLLHKLRAVEADEVIEWIM 65
+L A+KHVRYI+ EK+K+SFES+VM+H+R+NGAYWGLTTLDLL KL V +EVI W+M
Sbjct: 11 QLVADKHVRYILMAEKKKESFESVVMDHLRMNGAYWGLTTLDLLDKLGCVSEEEVISWLM 70
Query: 66 SCYHPESGGFGGNVGHDAHVLYTLSAVQVLCLFDRLDALDVDKVADYIAGLQNEDGSFSG 125
+C H ESGGF GN GHD H+LYTLSAVQ+L LFD+++ LD+ KV+ Y+A LQNEDGSFSG
Sbjct: 71 TCQH-ESGGFAGNTGHDPHILYTLSAVQILALFDKINILDIGKVSSYVAKLQNEDGSFSG 129
Query: 126 DIWGEVDTRFSYIAICTLSLLHRLEKINVQKAVDYIVSCKNLDGGFGAMPGGESHAGQIF 185
D+WGE+DTRFSYIAIC LS+L L+KINV+KAV YIVSCKNLDGGFG PG ESHAGQIF
Sbjct: 130 DMWGEIDTRFSYIAICCLSILKCLDKINVEKAVKYIVSCKNLDGGFGCTPGAESHAGQIF 189
Query: 186 CCVGALAITGSLHHIDRDLLGWWLCERQCKEGGLNGRPEKLADVCYSWWVLSSLIMIDRV 245
CCVGALAITGSLHH+D+D LGWWLCERQ K GGLNGRPEKLADVCYSWWVLSSLIMIDRV
Sbjct: 190 CCVGALAITGSLHHVDKDSLGWWLCERQLKAGGLNGRPEKLADVCYSWWVLSSLIMIDRV 249
Query: 246 HWIDKDKLAKFILNCQDKENGGISDRPDNAVDIYHTYFGVAGLSLMEYPGVKPMDPAYAL 305
HWIDK KL KFIL+CQD +NGGISDRP++AVDI+HTYFGVAGLSL+EYPGVK +DPAYAL
Sbjct: 250 HWIDKAKLVKFILDCQDLDNGGISDRPEDAVDIFHTYFGVAGLSLLEYPGVKVIDPAYAL 309
Query: 306 PLDVVNRIFLRK 317
P+DVVNRI K
Sbjct: 310 PVDVVNRIIFTK 321
>AT3G12070.1 | chr3:3845420-3847140 REVERSE LENGTH=318
Length = 317
Score = 495 bits (1274), Expect = e-140, Method: Compositional matrix adjust.
Identities = 240/315 (76%), Positives = 274/315 (86%), Gaps = 4/315 (1%)
Query: 6 ELAAEKHVRYIVTV--EKRKDSFESLVMEHIRLNGAYWGLTTLDLLHKLRAVEADEVIEW 63
+L A KH+RYI+ + EK+K+SFES+VM+H+R+NGAYWGLTTL LL KL +V DEV+ W
Sbjct: 4 KLVAGKHLRYILNLMAEKKKESFESVVMDHLRMNGAYWGLTTLALLDKLGSVSEDEVVSW 63
Query: 64 IMSCYHPESGGFGGNVGHDAHVLYTLSAVQVLCLFDRLDALDVDKVADYIAGLQNEDGSF 123
+M+C H ESGGF GN GHD HVLYTLSAVQ+L LFD+L+ LDV+KV++YIAGLQNEDGSF
Sbjct: 64 VMTCQH-ESGGFAGNTGHDPHVLYTLSAVQILALFDKLNILDVEKVSNYIAGLQNEDGSF 122
Query: 124 SGDIWGEVDTRFSYIAICTLSLLHRLEKINVQKAVDYIVSCKNLDGGFGAMPGGESHAGQ 183
SGDIWGEVDTRFSYIAIC LS+L L+KINV+KAVDYIVSCKNLDGGFG PG ESHAGQ
Sbjct: 123 SGDIWGEVDTRFSYIAICCLSILKCLDKINVKKAVDYIVSCKNLDGGFGCSPGAESHAGQ 182
Query: 184 IFCCVGALAITGSLHHIDRDLLGWWLCERQCKE-GGLNGRPEKLADVCYSWWVLSSLIMI 242
IFCCVGALAITG+LH +D+DLLGWWLCERQ E GGLNGRPEKL DVCYSWWVLSSLIMI
Sbjct: 183 IFCCVGALAITGNLHRVDKDLLGWWLCERQDYESGGLNGRPEKLPDVCYSWWVLSSLIMI 242
Query: 243 DRVHWIDKDKLAKFILNCQDKENGGISDRPDNAVDIYHTYFGVAGLSLMEYPGVKPMDPA 302
DRVHWI+K KL KFIL+ QD +NGGISDRP VDI+HTYFGVAGLSL+EYPGVK +DPA
Sbjct: 243 DRVHWIEKAKLVKFILDSQDMDNGGISDRPSYTVDIFHTYFGVAGLSLLEYPGVKTIDPA 302
Query: 303 YALPLDVVNRIFLRK 317
YALP+ V+NRI K
Sbjct: 303 YALPVHVINRILFTK 317
>AT2G39550.1 | chr2:16501666-16504144 FORWARD LENGTH=376
Length = 375
Score = 146 bits (368), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 100/309 (32%), Positives = 153/309 (49%), Gaps = 37/309 (11%)
Query: 35 RLNGAYWGLTTLDLLHKLRAVEADEVIEWIMSCY-HPES----------GGFG------- 76
RL A++ ++ L L V+ D V +W++S P + G FG
Sbjct: 62 RLTLAHFIISGLHFLGARDRVDKDVVAKWVLSFQAFPTNRVSLKDGEFYGFFGSRSSQFP 121
Query: 77 ----GNVGHD-AHVLYTLSAVQVLCLFDR-LDALDVDKVADYIAGLQNEDGSFSG-DIWG 129
G++ H+ +H+ T A+ +L + L +D + + LQ +DGSF I G
Sbjct: 122 IDENGDLKHNGSHLASTYCALAILKVIGHDLSTIDSKSLLISMINLQQDDGSFMPIHIGG 181
Query: 130 EVDTRFSYIAICTLSLLHRLEKINVQKAVDYIVSCKNLDGGFGAMPGGESHAGQIFCCVG 189
E D RF Y A +L ++ + A +YI++C++ DGGFG +PG ESH G +C +
Sbjct: 182 ETDLRFVYCAAAICYMLDSWSGMDKESAKNYILNCQSYDGGFGLIPGSESHGGATYCAIA 241
Query: 190 ALAITGSL-----------HHIDRDLLGWWLCERQCKEGGLNGRPEKLADVCYSWWVLSS 238
+L + G + ID LL W +RQ +GG GR K +D CY++W+ +
Sbjct: 242 SLRLMGYIGVDLLSNDSSSSIIDPSLLLNWCLQRQANDGGFQGRTNKPSDTCYAFWIGAV 301
Query: 239 LIMIDRVHWIDKDKLAKFILNCQDKENGGISDRPDNAVDIYHTYFGVAGLSLMEYPGVKP 298
L +I IDK L KF+++CQ K GG S P D+YH+Y+G SL+E G+ P
Sbjct: 302 LKLIGGDALIDKMALRKFLMSCQSKY-GGFSKFPGQLPDLYHSYYGYTAFSLLEEQGLSP 360
Query: 299 MDPAYALPL 307
+ P LPL
Sbjct: 361 LCPELGLPL 369
>AT5G40280.1 | chr5:16101391-16104783 FORWARD LENGTH=483
Length = 482
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 87/166 (52%), Gaps = 3/166 (1%)
Query: 84 HVLYTLSAVQVLCLF---DRLDALDVDKVADYIAGLQNEDGSFSGDIWGEVDTRFSYIAI 140
H+ T +AV L L +++ +K++ ++ +++ G F GE+D R Y AI
Sbjct: 157 HLATTYAAVNALVTLGGDKALSSINREKMSCFLRRMKDTSGGFRMHDMGEMDVRACYTAI 216
Query: 141 CTLSLLHRLEKINVQKAVDYIVSCKNLDGGFGAMPGGESHAGQIFCCVGALAITGSLHHI 200
S+L+ ++ Q DYI+SC+ +GG G PG E+H G +C + A+ + + +
Sbjct: 217 SVASILNIMDDELTQGLGDYILSCQTYEGGIGGEPGSEAHGGYTYCGLAAMILINEVDRL 276
Query: 201 DRDLLGWWLCERQCKEGGLNGRPEKLADVCYSWWVLSSLIMIDRVH 246
+ D L W RQ E G GR KL D CY++W + +++ R++
Sbjct: 277 NLDSLMNWAVHRQGVEMGFQGRTNKLVDGCYTFWQAAPCVLLQRLY 322
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 76/157 (48%), Gaps = 7/157 (4%)
Query: 139 AICTLSLLHRLEKINVQKAVDYIVSCKNLDGGFGAMPGGESHAGQIFCCVGALAITGSLH 198
A+ TL L IN +K ++ K+ GGF GE + C A+++ L+
Sbjct: 167 ALVTLGGDKALSSINREKMSCFLRRMKDTSGGFRMHDMGEM---DVRACYTAISVASILN 223
Query: 199 HIDRDL---LGWWLCERQCKEGGLNGRPEKLADVCYSWWVLSSLIMIDRVHWIDKDKLAK 255
+D +L LG ++ Q EGG+ G P A Y++ L+++I+I+ V ++ D L
Sbjct: 224 IMDDELTQGLGDYILSCQTYEGGIGGEPGSEAHGGYTYCGLAAMILINEVDRLNLDSLMN 283
Query: 256 FILNCQDKENGGISDRPDNAVDIYHTYFGVAGLSLME 292
+ ++ Q E G R + VD +T++ A L++
Sbjct: 284 WAVHRQGVEM-GFQGRTNKLVDGCYTFWQAAPCVLLQ 319
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.141 0.452
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,590,452
Number of extensions: 334075
Number of successful extensions: 709
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 675
Number of HSP's successfully gapped: 5
Length of query: 319
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 220
Effective length of database: 8,392,385
Effective search space: 1846324700
Effective search space used: 1846324700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 112 (47.8 bits)