Os01g0150100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Geranylgeranyltransferase beta subunit.
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Os01g0150100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Geranylgeranyltransferase beta subunit.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 59.57 | 0.363 | 8.99 | -1.26 | 0.333 | 0.815 | 0.283 | -0.1 | -0.0163 | 7.86 | 21.3 | 1367 | -- | -- |
| 59.5 | 0.359 | 8.99 | -1.23 | 0.334 | 0.811 | 0.274 | -- | -0.0145 | 7.86 | 21.42 | 1366 | -- | -- |
| 59.7 | 0.36 | 8.99 | -1.25 | 0.334 | 0.804 | -- | -0.0962 | -0.0189 | 7.87 | 21.42 | 1366 | -- | -- |
| 59.72 | 0.36 | 8.99 | -1.22 | 0.333 | 0.812 | -- | -- | -0.0143 | 7.88 | 21.46 | 1366 | -- | -- |
| 65.73 | 0.378 | 9 | -1.24 | -- | 0.807 | -- | -0.077 | -0.0143 | -- | 21.5 | 1399 | -- | -- |
| 78.71 | 0.416 | 8.94 | -0.895 | 0.336 | -- | 0.278 | -- | 0.217 | 7.47 | -- | -- | -- | -- |
| 78.93 | 0.416 | 8.94 | -0.889 | 0.337 | -- | -- | -- | 0.217 | 7.42 | -- | -- | -- | -- |
| 65.74 | 0.378 | 9 | -1.22 | -- | 0.813 | -- | -- | -0.00972 | -- | 21.44 | 1399 | -- | -- |
| 91.24 | 0.445 | 8.95 | -- | 0.323 | 0.46 | -- | -- | 0.178 | 8.01 | 22.3 | 1235 | -- | -- |
| 84.96 | 0.431 | 8.95 | -0.883 | -- | -- | -- | -- | 0.222 | -- | -- | -- | -- | -- |
| 99.74 | 0.467 | 8.92 | -- | 0.329 | -- | -- | -- | 0.316 | 7.6 | -- | -- | -- | -- |
| 97.13 | 0.459 | 8.95 | -- | -- | 0.444 | -- | -- | 0.184 | -- | 22.33 | 1390 | -- | -- |
| 105.54 | 0.48 | 8.92 | -- | -- | -- | -- | -- | 0.32 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 59.54 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 14 | 59.89 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 9 |
| 48 | 60.32 | temperature | 25 | 1440 | < th | dose dependent | sin | 14 | NA |
| 60 | 60.43 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 218 | 61.21 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 223 | 61.23 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 233 | 61.26 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 6 |
| 239 | 61.29 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 23 |
| 255 | 61.34 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 1 |
| 390 | 61.65 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 571 | 62.10 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 11 |
| 598 | 62.15 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 18 |
| 619 | 62.19 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 15 |
| 625 | 62.21 | temperature | 20 | 1440 | > th | dose independent | sin | 9 | NA |
| 627 | 62.21 | temperature | 10 | 1440 | > th | dose dependent | sin | 11 | NA |
| 660 | 62.27 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 11 |
| 689 | 62.31 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 723 | 62.34 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 727 | 62.35 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 18 |
| 739 | 62.37 | temperature | 20 | 1440 | < th | dose independent | sin | 8 | NA |
| 748 | 62.38 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 749 | 62.38 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 19 |
| 754 | 62.39 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 15 |
| 776 | 62.42 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 802 | 62.45 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 811 | 62.46 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 926 | 62.60 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 19 |