BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0506000 Os08g0506000|AK073328
(325 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0506000 Ovarian tumour, otubain domain containing protein 646 0.0
Os09g0487700 Ovarian tumour, otubain domain containing protein 346 1e-95
Os01g0900900 Ovarian tumour, otubain domain containing protein 194 7e-50
Os03g0266000 Ovarian tumour, otubain domain containing protein 82 5e-16
>Os08g0506000 Ovarian tumour, otubain domain containing protein
Length = 325
Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/325 (96%), Positives = 312/325 (96%)
Query: 1 MRLYSSAVNLRRPSKRTMYSQSSQFHGGLTQSLGLRKCSRSQTSSYNVKLGLVDCSLHRN 60
MRLYSSAVNLRRPSKRTMYSQSSQFHGGLTQSLGLRKCSRSQTSSYNVKLGLVDCSLHRN
Sbjct: 1 MRLYSSAVNLRRPSKRTMYSQSSQFHGGLTQSLGLRKCSRSQTSSYNVKLGLVDCSLHRN 60
Query: 61 IKSSDRPSLRYFVSLVGRQFRCGLSGKEGSLNMKLDMPSRDNFSSMSWKWRGLHQKIGGT 120
IKSSDRPSLRYFVSLVGRQFRCGLSGKEGSLNMKLDMPSRDNFSSMSWKWRGLHQKIGGT
Sbjct: 61 IKSSDRPSLRYFVSLVGRQFRCGLSGKEGSLNMKLDMPSRDNFSSMSWKWRGLHQKIGGT 120
Query: 121 TSGLCLGFAVSGIANAEVPVEXXXXXXXXXXXXXHGKEVYTDYSVTGIPGDGRCLFRSVI 180
TSGLCLGFAVSGIANAEVPVE HGKEVYTDYSVTGIPGDGRCLFRSVI
Sbjct: 121 TSGLCLGFAVSGIANAEVPVEISISNSAASTSSTHGKEVYTDYSVTGIPGDGRCLFRSVI 180
Query: 181 HGACIRAGRPIPNEDLQRKLADELRAMVADEFVKRREESEWFIEGDFDTYVSHIRHPHVW 240
HGACIRAGRPIPNEDLQRKLADELRAMVADEFVKRREESEWFIEGDFDTYVSHIRHPHVW
Sbjct: 181 HGACIRAGRPIPNEDLQRKLADELRAMVADEFVKRREESEWFIEGDFDTYVSHIRHPHVW 240
Query: 241 GGEPELFMASHVLEMPITVYMHDEDAGGLITIAEYGQQYGKEDPIQVLYDGFAHYDAVQI 300
GGEPELFMASHVLEMPITVYMHDEDAGGLITIAEYGQQYGKEDPIQVLYDGFAHYDAVQI
Sbjct: 241 GGEPELFMASHVLEMPITVYMHDEDAGGLITIAEYGQQYGKEDPIQVLYDGFAHYDAVQI 300
Query: 301 PAKKCSREMTSEFLKFQGSNGRIWS 325
PAKKCSREMTSEFLKFQGSNGRIWS
Sbjct: 301 PAKKCSREMTSEFLKFQGSNGRIWS 325
>Os09g0487700 Ovarian tumour, otubain domain containing protein
Length = 306
Score = 346 bits (888), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 179/306 (58%), Positives = 212/306 (69%), Gaps = 10/306 (3%)
Query: 1 MRLYSSAVNLRRPSKRTMYSQSSQFHGGLTQSLGLRKCSRSQTSSYNVKLGLVDCSLHRN 60
M +Y+ V L+R ++YSQS Q GGLTQ + L K SRSQ Y+VK+ LV N
Sbjct: 1 MAIYTPTVCLQR-CTYSLYSQSCQLQGGLTQGMALWKYSRSQAVGYHVKIRLVGLPPKMN 59
Query: 61 IKSSDRPSLRYFVSLVGRQFRCGLSGKEGSLNMKLDMPSRDNFSSMSWKWRGLHQKIGGT 120
IKS LR + G+Q ++ L +KLD PSR S+ W R + K+G T
Sbjct: 60 IKS-----LRTCFASSGKQLCGRQPARDNILKLKLDEPSRQKLYSILWDSRSIGHKVGAT 114
Query: 121 TSGLCLGFAVSGIANAEVPVEXXX---XXXXXXXXXXHGKEVYTDYSVTGIPGDGRCLFR 177
+GL L FAV ANAE PV+ HGK+V TDYSVTGIPGDGRCLFR
Sbjct: 115 GTGLFLSFAVPAKANAEGPVDNNTDSPQTTESSTSYAHGKKVCTDYSVTGIPGDGRCLFR 174
Query: 178 SVIHGACIRAGRPIPNEDLQRKLADELRAMVADEFVKRREESEWFIEGDFDTYVSHIRHP 237
SV HGACIR+G+ P++DLQRK+AD+LRAMVADEF+KRR E+EWF+EGDFD YVS IR P
Sbjct: 175 SVAHGACIRSGKR-PDDDLQRKMADDLRAMVADEFIKRRAETEWFVEGDFDAYVSRIRKP 233
Query: 238 HVWGGEPELFMASHVLEMPITVYMHDEDAGGLITIAEYGQQYGKEDPIQVLYDGFAHYDA 297
HVWGGEPEL MASHVL MPITVYMHD++AGGLI IAEYGQ+YGKEDPIQVL+ GF HYDA
Sbjct: 234 HVWGGEPELLMASHVLRMPITVYMHDKEAGGLIAIAEYGQEYGKEDPIQVLFHGFGHYDA 293
Query: 298 VQIPAK 303
+QIP K
Sbjct: 294 LQIPGK 299
>Os01g0900900 Ovarian tumour, otubain domain containing protein
Length = 166
Score = 194 bits (493), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 86/132 (65%), Positives = 109/132 (82%)
Query: 168 IPGDGRCLFRSVIHGACIRAGRPIPNEDLQRKLADELRAMVADEFVKRREESEWFIEGDF 227
I GDGRCLFRSV +GAC+R G+ P++ +Q++LADELR+ VADEFV+RR ++EWF+EGDF
Sbjct: 14 ITGDGRCLFRSVAYGACLRRGKQSPSDSIQKELADELRSKVADEFVRRRGDTEWFLEGDF 73
Query: 228 DTYVSHIRHPHVWGGEPELFMASHVLEMPITVYMHDEDAGGLITIAEYGQQYGKEDPIQV 287
++YV IR PHVWGGEPEL M SHVL MPITVYM+ + + IAEYGQ+YGK++PI V
Sbjct: 74 ESYVRQIRKPHVWGGEPELLMCSHVLRMPITVYMYTKGSDSPRIIAEYGQEYGKDNPICV 133
Query: 288 LYDGFAHYDAVQ 299
LYDG+ HYDA+Q
Sbjct: 134 LYDGYGHYDALQ 145
>Os03g0266000 Ovarian tumour, otubain domain containing protein
Length = 224
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 80/154 (51%), Gaps = 22/154 (14%)
Query: 163 YSVTGIPGDGRCLFRSVIHGACIRAGRPIPN-EDLQRKLADELRA----MVADEFVKRRE 217
Y V + GDGRC+FR+++ G G P+ + E++Q AD+LR ++ D+ +R++
Sbjct: 70 YGVQRVTGDGRCMFRALVKGMAKNKGIPLTSREEVQD--ADDLRMAVKEVICDDETERQK 127
Query: 218 ESEWFIEGDFDT----YVSHIRHPHVWGGEPELFMASHVLEMPITVYMHDED----AGGL 269
E I D Y IR WGGE EL + S + PI +Y+ + + G
Sbjct: 128 YEEAVIAITVDESLRRYCHRIRRSDFWGGESELLVLSKLCRQPIIIYIPEREYHGRGNGF 187
Query: 270 ITIAEYG-------QQYGKEDPIQVLYDGFAHYD 296
I IAEYG +Q+ K+ P+++LY G HYD
Sbjct: 188 IPIAEYGLEFSKDSKQWKKKVPVRLLYSGRNHYD 221
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.136 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,363,126
Number of extensions: 483515
Number of successful extensions: 883
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 877
Number of HSP's successfully gapped: 4
Length of query: 325
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 224
Effective length of database: 11,762,187
Effective search space: 2634729888
Effective search space used: 2634729888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)