BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0502800 Os08g0502800|AK105444
(406 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0502800 MDM2 oncoprotein family protein 539 e-153
Os04g0665500 Similar to BAF60b domain protein 244 6e-65
AK067322 244 7e-65
Os02g0130000 Similar to SWIb domain-containing protein (Fra... 70 3e-12
>Os08g0502800 MDM2 oncoprotein family protein
Length = 406
Score = 539 bits (1389), Expect = e-153, Method: Compositional matrix adjust.
Identities = 286/406 (70%), Positives = 286/406 (70%)
Query: 1 MLSDQELARYVESFVRQXXXXXXXXXXXXXXXXXXXXRQLGPQLGLDLTPKAPLIRDILL 60
MLSDQELARYVESFVRQ RQLGPQLGLDLTPKAPLIRDILL
Sbjct: 1 MLSDQELARYVESFVRQAAAVPGAVAAAGGISAESVARQLGPQLGLDLTPKAPLIRDILL 60
Query: 61 ALFSPPPQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYQHRXX 120
ALFSPPPQG YQHR
Sbjct: 61 ALFSPPPQGAPFTSSAPSPSASASASASAAAAGHFFSQQQQQQQLQTFLTASQQYQHRGG 120
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXFPQDEGAHLQRLXXXXXXXXXXXXXXXXXXXXXXX 180
FPQDEGAHLQRL
Sbjct: 121 AGAAAAPPSAYGVAAAAAGYRYGQPFPQDEGAHLQRLVQMHHHQQQQQQQQQQQMAAAAA 180
Query: 181 XXXXXPPTAVESPRPAAASKKESASTGVKRRGGPGGLNKVCGVSPELQAIVGEPTMARTE 240
PPTAVESPRPAAASKKESASTGVKRRGGPGGLNKVCGVSPELQAIVGEPTMARTE
Sbjct: 181 GVAAAPPTAVESPRPAAASKKESASTGVKRRGGPGGLNKVCGVSPELQAIVGEPTMARTE 240
Query: 241 IVKQLWAYIRRNNLQDPNNKRKIICNDELRLVFETDSTDMFKMNKLLAKHIRPLEAKKDS 300
IVKQLWAYIRRNNLQDPNNKRKIICNDELRLVFETDSTDMFKMNKLLAKHIRPLEAKKDS
Sbjct: 241 IVKQLWAYIRRNNLQDPNNKRKIICNDELRLVFETDSTDMFKMNKLLAKHIRPLEAKKDS 300
Query: 301 NRDSKKLKPVDSEPISPAETDVNQLPIILSDALASFFGTGEKEMPSSEAVKRVWDHIKSN 360
NRDSKKLKPVDSEPISPAETDVNQLPIILSDALASFFGTGEKEMPSSEAVKRVWDHIKSN
Sbjct: 301 NRDSKKLKPVDSEPISPAETDVNQLPIILSDALASFFGTGEKEMPSSEAVKRVWDHIKSN 360
Query: 361 NLEDPANPTMILCDSKLKQLFGCESLTAVSVSELLSQHLFKQPNKL 406
NLEDPANPTMILCDSKLKQLFGCESLTAVSVSELLSQHLFKQPNKL
Sbjct: 361 NLEDPANPTMILCDSKLKQLFGCESLTAVSVSELLSQHLFKQPNKL 406
>Os04g0665500 Similar to BAF60b domain protein
Length = 336
Score = 244 bits (624), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 125/209 (59%), Positives = 159/209 (76%), Gaps = 11/209 (5%)
Query: 196 AAASKKESASTGVKRRGGPGGLNKVCGVSPELQAIVGEPTMARTEIVKQLWAYIRRNNLQ 255
AA KESAS ++RGGPGGLNKVC +SPELQ IVGE M+RT+IVKQLW YIR+NNLQ
Sbjct: 136 AAGDNKESASK--RKRGGPGGLNKVCAISPELQTIVGETVMSRTQIVKQLWQYIRQNNLQ 193
Query: 256 DPNNKRKIICNDELRLVFETDSTDMFKMNKLLAKHIRPLEAKKDSNRDSKKLKP--VDSE 313
DP++KRKIICNDELR+VF TD+TDMFKMNKLLAKHI PL+ KD R++KK KP V ++
Sbjct: 194 DPDDKRKIICNDELRVVFGTDTTDMFKMNKLLAKHITPLD-PKDQIREAKKFKPSNVATQ 252
Query: 314 PISPAETDVNQLPIILSDALASFFGTGEKEMPSSEAVKRVWDHIKSNNLEDPANPTMILC 373
P+ +NQ +++SDALA F G E +P +A++ +WD+IK+N LED A ILC
Sbjct: 253 PMP----LINQPSVVISDALAKFIGM-EGTVPQDDALRYLWDYIKANQLED-AITGSILC 306
Query: 374 DSKLKQLFGCESLTAVSVSELLSQHLFKQ 402
DSKL++LFGCES+ + +SELL+ H K+
Sbjct: 307 DSKLQELFGCESIPSSGLSELLAHHFIKE 335
>AK067322
Length = 418
Score = 244 bits (624), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 124/209 (59%), Positives = 159/209 (76%), Gaps = 11/209 (5%)
Query: 196 AAASKKESASTGVKRRGGPGGLNKVCGVSPELQAIVGEPTMARTEIVKQLWAYIRRNNLQ 255
AA KESAS ++RGGPGGLNKVC +SPELQ IVGE M+RT+IVKQLW YIR+NNLQ
Sbjct: 218 AAGDNKESASK--RKRGGPGGLNKVCAISPELQTIVGETVMSRTQIVKQLWQYIRQNNLQ 275
Query: 256 DPNNKRKIICNDELRLVFETDSTDMFKMNKLLAKHIRPLEAKKDSNRDSKKLKP--VDSE 313
DP++KRKIICNDELR+VF TD+TDMFKMNKLLA+HI PL+ KD R++KK KP V ++
Sbjct: 276 DPDDKRKIICNDELRVVFGTDTTDMFKMNKLLARHITPLD-PKDQIREAKKFKPSNVATQ 334
Query: 314 PISPAETDVNQLPIILSDALASFFGTGEKEMPSSEAVKRVWDHIKSNNLEDPANPTMILC 373
P+ +NQ +++SDALA F G E +P +A++ +WD+IK+N LED A ILC
Sbjct: 335 PMP----LINQPSVVISDALAKFIGM-EGTVPQDDALRYLWDYIKANQLED-AITGSILC 388
Query: 374 DSKLKQLFGCESLTAVSVSELLSQHLFKQ 402
DSKL++LFGCES+ + +SELL+ H K+
Sbjct: 389 DSKLQELFGCESIPSSGLSELLAHHFIKE 417
>Os02g0130000 Similar to SWIb domain-containing protein (Fragment)
Length = 131
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 51/77 (66%), Gaps = 2/77 (2%)
Query: 326 PIILSDALASFFGTGEKEMPSSEAVKRVWDHIKSNNLEDPANPTMILCDSKLKQLF-GCE 384
P+ +SDAL+ F G G EM + AVK +W+HIK+N L++PAN I CD KLK LF G +
Sbjct: 54 PVPVSDALSRFAG-GAPEMSRAGAVKLIWNHIKANGLQNPANKREINCDDKLKSLFAGKD 112
Query: 385 SLTAVSVSELLSQHLFK 401
+ + +++LLS H K
Sbjct: 113 KVGMMEIAKLLSPHFIK 129
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.133 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,232,323
Number of extensions: 386630
Number of successful extensions: 1325
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1309
Number of HSP's successfully gapped: 5
Length of query: 406
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 303
Effective length of database: 11,657,759
Effective search space: 3532300977
Effective search space used: 3532300977
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 157 (65.1 bits)