Os04g0665500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to BAF60b domain protein.
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Os04g0665500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to BAF60b domain protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.22 | 0.211 | 11.8 | 0.494 | 0.502 | 0.711 | -0.337 | 0.608 | 0.0928 | 23.2 | 24.2 | 88 | -- | -- |
| 20.69 | 0.212 | 11.7 | 0.575 | 0.497 | 0.651 | -0.189 | -- | 0.106 | 23.2 | 24.3 | 77 | -- | -- |
| 20.62 | 0.211 | 11.8 | 0.535 | 0.507 | 0.681 | -- | 0.376 | 0.0989 | 23.2 | 24.2 | 82 | -- | -- |
| 20.83 | 0.213 | 11.7 | 0.589 | 0.507 | 0.65 | -- | -- | 0.112 | 23.2 | 24.3 | 74 | -- | -- |
| 33.96 | 0.273 | 11.7 | 0.606 | -- | 0.934 | -- | 0.337 | 0.176 | -- | 25.16 | 52 | -- | -- |
| 26.47 | 0.241 | 11.8 | 0.427 | 0.594 | -- | -0.197 | -- | 0.00108 | 23.6 | -- | -- | -- | -- |
| 26.64 | 0.242 | 11.8 | 0.435 | 0.595 | -- | -- | -- | 0.00195 | 23.5 | -- | -- | -- | -- |
| 33.94 | 0.273 | 11.7 | 0.65 | -- | 0.892 | -- | -- | 0.195 | -- | 25.95 | 21 | -- | -- |
| 28.98 | 0.252 | 11.8 | -- | 0.534 | 0.407 | -- | -- | 0.0128 | 23.4 | 24.3 | 74 | -- | -- |
| 48.85 | 0.327 | 11.8 | 0.451 | -- | -- | -- | -- | 0.00856 | -- | -- | -- | -- | -- |
| 31.62 | 0.263 | 11.8 | -- | 0.6 | -- | -- | -- | -0.0465 | 23.6 | -- | -- | -- | -- |
| 44.24 | 0.311 | 11.7 | -- | -- | 0.701 | -- | -- | 0.0891 | -- | 26.2 | 6 | -- | -- |
| 54.22 | 0.344 | 11.8 | -- | -- | -- | -- | -- | -0.0415 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.56 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 9 |
| 2 | 18.79 | temperature | 25 | 270 | < th | dose dependent | rect. | 13 | 17 |
| 4 | 18.82 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 16 |
| 8 | 18.91 | temperature | 25 | 90 | < th | dose dependent | rect. | 13 | 20 |
| 25 | 19.07 | temperature | 25 | 720 | < th | dose independent | rect. | 12 | 12 |
| 130 | 19.47 | temperature | 25 | 720 | > th | dose independent | rect. | 14 | 9 |
| 132 | 19.47 | temperature | 30 | 720 | < th | dose dependent | rect. | 13 | 11 |
| 185 | 19.73 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 7 |
| 240 | 19.90 | temperature | 25 | 270 | < th | dose dependent | sin | 14 | NA |
| 280 | 20.01 | temperature | 25 | 720 | > th | dose independent | sin | 17 | NA |
| 290 | 20.04 | temperature | 25 | 720 | < th | dose independent | sin | 17 | NA |
| 319 | 20.09 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 7 |
| 413 | 20.29 | temperature | 20 | 90 | > th | dose independent | rect. | 20 | 9 |
| 474 | 20.41 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 491 | 20.44 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 498 | 20.46 | temperature | 20 | 90 | > th | dose independent | rect. | 9 | 20 |
| 501 | 20.47 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 1 |
| 533 | 20.52 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 534 | 20.52 | temperature | 25 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 570 | 20.57 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 589 | 20.61 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 21 |
| 599 | 20.63 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 606 | 20.63 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 608 | 20.63 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 621 | 20.64 | temperature | 25 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 623 | 20.64 | temperature | 25 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 661 | 20.67 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 23 |