BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0665500 Os04g0665500|AK066509
(336 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G22360.1 | chr4:11807811-11809660 FORWARD LENGTH=386 209 2e-54
AT3G19080.1 | chr3:6596082-6598667 FORWARD LENGTH=463 161 6e-40
AT1G49520.1 | chr1:18329736-18331691 FORWARD LENGTH=373 110 7e-25
AT2G35605.1 | chr2:14946161-14947027 FORWARD LENGTH=110 78 8e-15
AT2G14880.1 | chr2:6393686-6394841 REVERSE LENGTH=142 76 2e-14
AT3G03590.1 | chr3:865341-866669 REVERSE LENGTH=144 69 3e-12
AT3G48600.2 | chr3:18010168-18011363 REVERSE LENGTH=229 66 3e-11
AT4G34290.1 | chr4:16410883-16412122 FORWARD LENGTH=145 64 1e-10
AT1G31760.1 | chr1:11372602-11373414 REVERSE LENGTH=113 63 2e-10
AT4G26810.1 | chr4:13492247-13492649 REVERSE LENGTH=107 53 2e-07
AT3G01890.1 | chr3:310332-311772 FORWARD LENGTH=459 52 4e-07
>AT4G22360.1 | chr4:11807811-11809660 FORWARD LENGTH=386
Length = 385
Score = 209 bits (531), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 110/219 (50%), Positives = 147/219 (67%), Gaps = 9/219 (4%)
Query: 125 GGTASPTAAVQAAGDNKESASKRKRGGPGGLNKVCAISPELQTIVGETVMSRTQIVKQLW 184
GG AS + QA ++ + +KRK GGPGGLNKVC +SPEL+ +VGE + RT+IV+QLW
Sbjct: 169 GGNAS-LSVNQAPKESAPAGTKRK-GGPGGLNKVCRVSPELEVVVGEPALPRTEIVRQLW 226
Query: 185 QYIRQNNLQDPDDKRKIICNDELRVVFGTDTTDMFKMNKLLAKHITPLDPKDQIREAKK- 243
YIR+NNLQDP +KRKIIC+D LRVVF TD TDMFKMNKLLAKHI PLDP +AKK
Sbjct: 227 AYIRKNNLQDPSNKRKIICDDALRVVFETDCTDMFKMNKLLAKHILPLDPSKDSGQAKKA 286
Query: 244 -FKPSNVATQPMPLIN---QPSVVISDALAKFIGM-EGTVPQDDALRYLWDYIKANQLED 298
+ P+ + +V +S+ L KF G E + ++ +R +W+YIK N LED
Sbjct: 287 KTEVETKTETTEPISSTAISSTVTLSEPLGKFFGTGETEMADEEIIRRVWEYIKLNNLED 346
Query: 299 AITG-SILCDSKLQELFGCESIPSSGLSELLAHHFIKET 336
+ +I CD KL++L GCESI + G++E+L H K++
Sbjct: 347 PVNPMAIQCDEKLRDLLGCESISAVGINEMLRRHMYKQS 385
>AT3G19080.1 | chr3:6596082-6598667 FORWARD LENGTH=463
Length = 462
Score = 161 bits (407), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 128/216 (59%), Gaps = 32/216 (14%)
Query: 143 SASKRKRGGPGGLNKVCAISPELQTIVGETVMSRTQIVKQLWQYIRQNNLQDPDDKRKII 202
S K KR G GG KVC++SPELQ G T ++RT++VK LW+YI++NNLQDP+DKR II
Sbjct: 252 SVEKPKRKGGGGFAKVCSLSPELQAFTGVTELARTEVVKLLWKYIKENNLQDPNDKRSII 311
Query: 203 CNDELRVVFGTDTTDMFKMNKLLAKHITPLD-----------PKD--QIREA-------- 241
C++ R +F ++ +MF+MNK L KHI PL+ PK+ Q E+
Sbjct: 312 CDESFRSLFPVESINMFQMNKQLTKHIWPLEDNAGESVSSKSPKNGKQKMESDGDSEEPN 371
Query: 242 -KKFKPSNVATQPMPLINQPSVVISDALAKFIGM-EGTVPQDDALRYLWDYIKANQLED- 298
K K P+PL SDAL KF+G E ++ + D ++ LW+YI N L+D
Sbjct: 372 EKDKKQKKEVLAPLPL--------SDALVKFLGDGENSLSRADVVKRLWEYINHNDLQDP 423
Query: 299 AITGSILCDSKLQELFGCESIPSSGLSELLAHHFIK 334
+ ++CD KL+ELF +S + +S+LL +HFIK
Sbjct: 424 SDKRRVICDEKLKELFEVDSFEDTSVSKLLTNHFIK 459
Score = 112 bits (279), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 111/232 (47%), Gaps = 49/232 (21%)
Query: 147 RKRGGPGGLNKVCAISPELQTIVGETVMSRTQIVKQLWQYIRQNNLQDPDDKRKIICNDE 206
+KRGG G+ KV +SP+L+ +VG + + RT++VK++W YIR+ +LQDP D+RKI+C++
Sbjct: 110 KKRGG--GITKVSQLSPQLEKVVGASQLGRTEVVKKMWAYIREKDLQDPKDRRKIVCDEL 167
Query: 207 LRVVFGTDTTDMFKMNKLLAKHITPLDPKDQIREAKKFKPSNVATQ-------------- 252
L +F T +MF+MNK L KHI PL D K + + A++
Sbjct: 168 LHSLFRVKTINMFQMNKALTKHIWPLGDGDGCANDVKEEDEDEASEGTDKKGEQSEEVEE 227
Query: 253 ---------------------PMPLINQPS----------VVISDALAKFIGMEGTVPQD 281
P + +P +S L F G+ + +
Sbjct: 228 NKEEESEEQEVRSLRKRKRKKPAKSVEKPKRKGGGGFAKVCSLSPELQAFTGV-TELART 286
Query: 282 DALRYLWDYIKANQLED-AITGSILCDSKLQELFGCESIPSSGLSELLAHHF 332
+ ++ LW YIK N L+D SI+CD + LF ESI +++ L H
Sbjct: 287 EVVKLLWKYIKENNLQDPNDKRSIICDESFRSLFPVESINMFQMNKQLTKHI 338
>AT1G49520.1 | chr1:18329736-18331691 FORWARD LENGTH=373
Length = 372
Score = 110 bits (276), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 51/95 (53%), Positives = 70/95 (73%), Gaps = 1/95 (1%)
Query: 143 SASKRKRGGPGGLNKVCAISPELQTIVGETVMSRTQIVKQLWQYIRQNNLQDPDDKRKII 202
S K K+ G GG KVC++SPELQ G ++RT++VK LW+YI++NNLQDP DKR II
Sbjct: 240 SEEKPKKKG-GGFTKVCSLSPELQAFTGTPQLARTEVVKMLWKYIKENNLQDPSDKRTII 298
Query: 203 CNDELRVVFGTDTTDMFKMNKLLAKHITPLDPKDQ 237
C++ LR +F ++ +MF+MNK LAKHI PL +D+
Sbjct: 299 CDESLRSLFPVESINMFQMNKQLAKHIWPLVQEDE 333
Score = 100 bits (250), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 74/119 (62%), Gaps = 1/119 (0%)
Query: 118 QQPAPGTGGTASPTAAVQAAGDNKESASKRKRGGPGGLNKVCAISPELQTIVGETVMSRT 177
+Q G + + D E K K+ G GG NK+C +SP+L+ +G + ++RT
Sbjct: 66 EQEEEDCNGDQNDEEGSENDDDKTELPVKAKKRG-GGFNKICQLSPQLEKFLGTSQLART 124
Query: 178 QIVKQLWQYIRQNNLQDPDDKRKIICNDELRVVFGTDTTDMFKMNKLLAKHITPLDPKD 236
++VK++W YIR+++LQDP ++R I+C++ L +F T +MF+MNK LAKHI L+ D
Sbjct: 125 EVVKKMWAYIREHDLQDPTNRRNILCDESLHSLFRVKTINMFQMNKALAKHIWALNDGD 183
>AT2G35605.1 | chr2:14946161-14947027 FORWARD LENGTH=110
Length = 109
Score = 77.8 bits (190), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 60/88 (68%), Gaps = 2/88 (2%)
Query: 143 SASKRKRGGPGGLNKVCAISPELQTIVGETVMSRTQIVKQLWQYIRQNNLQDPDDKRKII 202
+ +K R G G L KV +S L +GE +SRT VK++W+YI+ NNLQ+P +KR+I+
Sbjct: 19 TGAKTGRQGTGIL-KVVPVSKPLANFIGENEVSRTTAVKKIWEYIKLNNLQNPVNKREIL 77
Query: 203 CNDELRVVF-GTDTTDMFKMNKLLAKHI 229
C+++L+ +F G DT +++KLL++H
Sbjct: 78 CDEQLKTIFSGKDTVGFLEISKLLSQHF 105
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 262 VVISDALAKFIGMEGTVPQDDALRYLWDYIKANQLEDAITG-SILCDSKLQELF-GCESI 319
V +S LA FIG E V + A++ +W+YIK N L++ + ILCD +L+ +F G +++
Sbjct: 34 VPVSKPLANFIG-ENEVSRTTAVKKIWEYIKLNNLQNPVNKREILCDEQLKTIFSGKDTV 92
Query: 320 PSSGLSELLAHHFIK 334
+S+LL+ HF K
Sbjct: 93 GFLEISKLLSQHFPK 107
>AT2G14880.1 | chr2:6393686-6394841 REVERSE LENGTH=142
Length = 141
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 64/98 (65%), Gaps = 2/98 (2%)
Query: 133 AVQAAGDNKESASKRKRGGPGGLNKVCAISPELQTIVGETVMSRTQIVKQLWQYIRQNNL 192
AV +A ++ E + KR P G+ K +SPE+Q IV ++RTQ +K++W YI++++L
Sbjct: 44 AVTSATESSEPTATNKRV-PRGIMKPRPVSPEMQDIVELPEIARTQALKRIWAYIKEHDL 102
Query: 193 QDPDDKRKIICNDELRVVF-GTDTTDMFKMNKLLAKHI 229
QDP +KR+I+C+++L+ +F G D ++ KL+ H
Sbjct: 103 QDPQNKREILCDEKLKKIFEGRDRVGFLEIAKLIGPHF 140
>AT3G03590.1 | chr3:865341-866669 REVERSE LENGTH=144
Length = 143
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 154 GLNKVCAISPELQTIVGETVMSRTQIVKQLWQYIRQNNLQDPDDKRKIICNDELRVVF-G 212
G+ KV +SP L +G SRT +K +W YI+ ++LQ+P DKR+I C++ L+++F G
Sbjct: 63 GIFKVTPVSPVLAQFLGTGETSRTDAIKGIWTYIKSHDLQNPADKREIFCDETLKLIFEG 122
Query: 213 TDTTDMFKMNKLLAKHI 229
D +++KLL+ H
Sbjct: 123 KDKVGFLEISKLLSPHF 139
>AT3G48600.2 | chr3:18010168-18011363 REVERSE LENGTH=229
Length = 228
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 98/196 (50%), Gaps = 23/196 (11%)
Query: 153 GGLNKVCAISPELQTIVGETVMSRTQIVKQLWQYIRQNNLQDPDDKRKIICNDELRVVF- 211
GG++K+ +S L VG++ +S + ++++ QY +NL +P++ +I+C+D L+ +F
Sbjct: 33 GGIHKIFPVSESLARFVGQSEVSFSTAMEKVEQYTDDHNLWNPENIEEILCDDNLKTIFD 92
Query: 212 GTD-TTDMFKMNKLLAKHITPLDPKDQIREAKKFKPSNVATQPMPLINQPSVVISDALAK 270
G D + +M +LL +H P + A K K + T N V +S+ LA+
Sbjct: 93 GQDKVVGVREMTELLLRHF----PNVRTMSA-KVKATGGGTIEKWGFNDI-VKVSEPLAR 146
Query: 271 FIGMEGTVPQDDALRYLWDYIKANQLEDA---------IT----GSILCDSKLQELF-GC 316
F+G + + D ALR L DY ++L D IT I CD L+ + G
Sbjct: 147 FVG-QSEISFDAALRKLLDYAFDHKLVDEGVTLLEFPWITKCSKWRIRCDDTLKTILDGK 205
Query: 317 ESIPSSGLSELLAHHF 332
+ + + LS LL HF
Sbjct: 206 DKVGNKELSSLLMQHF 221
>AT4G34290.1 | chr4:16410883-16412122 FORWARD LENGTH=145
Length = 144
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 152 PGGLNKVCAISPELQTIVGETVMSRTQIVKQLWQYIRQNNLQDPDDKRKIICNDELRVVF 211
P G+ K +S +Q +VG + RTQ +K++W YI++++LQDP +KR I+C+++L+ +F
Sbjct: 65 PRGIMKPRPVSQAMQDVVGVPEIPRTQALKRIWAYIKEHDLQDPQNKRDILCDEKLKKIF 124
Query: 212 -GTDTTDMFKMNKLLAKH 228
G + ++ KL+ H
Sbjct: 125 EGKERVGFLEIAKLIGPH 142
>AT1G31760.1 | chr1:11372602-11373414 REVERSE LENGTH=113
Length = 112
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 59/103 (57%), Gaps = 13/103 (12%)
Query: 128 ASPTAAVQAAGDNKESASKRKRGGPGGLNKVCAISPELQTIVGETVMSRTQIVKQLWQYI 187
A+ AV AG+ K G+ K +S +L + GE ++R +K++W+Y+
Sbjct: 18 AATVEAVTVAGEGK------------GIFKTRPVSQQLASFAGERELTRGSALKKVWEYV 65
Query: 188 RQNNLQDPDDKRKIICNDELRVVF-GTDTTDMFKMNKLLAKHI 229
+ +NLQ+P +K++I C+D+L+ +F G D + ++ KLL+ H
Sbjct: 66 KLHNLQNPANKKEIHCDDKLKTIFDGKDKVGITEIMKLLSPHF 108
>AT4G26810.1 | chr4:13492247-13492649 REVERSE LENGTH=107
Length = 106
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 52/93 (55%), Gaps = 5/93 (5%)
Query: 153 GGLNKVCAISPELQTIVGETVMSRTQIVKQLWQYIRQNNLQDPDDKRKIICNDELR-VVF 211
G L + + L+ VG++ +SR ++W YI+ NNLQDP +K +IC+++L+ ++
Sbjct: 18 GNLIDLVNLPSTLRNFVGQSQISRLGCFMRVWSYIKTNNLQDPKNKNVVICDEKLKSILL 77
Query: 212 GTDTTDMFKMNKLLAKHITPLDPKDQIREAKKF 244
G ++ + L+ H PK+Q + ++K
Sbjct: 78 GKQRVELVDLPSLIKLHF----PKEQKKNSQKI 106
>AT3G01890.1 | chr3:310332-311772 FORWARD LENGTH=459
Length = 458
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 43/81 (53%)
Query: 162 SPELQTIVGETVMSRTQIVKQLWQYIRQNNLQDPDDKRKIICNDELRVVFGTDTTDMFKM 221
SP L ++G V +R +I+ +W Y++ LQ+P+D C+ L VFG + +
Sbjct: 253 SPALMQVLGIEVDTRPRIIAAIWHYVKVRKLQNPNDPSFFNCDAALHSVFGEEKMKFTML 312
Query: 222 NKLLAKHITPLDPKDQIREAK 242
+ +++H++P P + + K
Sbjct: 313 SHKISQHLSPPPPIQLVHKIK 333
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.134 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,635,586
Number of extensions: 226895
Number of successful extensions: 702
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 690
Number of HSP's successfully gapped: 14
Length of query: 336
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 237
Effective length of database: 8,392,385
Effective search space: 1988995245
Effective search space used: 1988995245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)