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Os08g0502800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : MDM2 oncoprotein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13 (0.0152) R2 : 0.0264
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.112 (0.0319) R2dN8 : 0.034 R2N8 : 0.0264
σ : 0.285
deviance : 37.4
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
14.61 0.18 13 1.02 0.491 -0.63 -0.403 1.61 0.355 20.2 9.85 785 -- --
16.61 0.19 13 0.843 0.363 -0.527 -0.144 -- 0.325 20 7.001 7385 -- --
14.69 0.179 13 1.07 0.378 -0.557 -- 1.55 0.364 20.5 9.64 1217 -- --
16.64 0.19 13 0.876 0.373 -0.549 -- -- 0.348 20 9.271 9120 -- --
22.53 0.221 13 1.12 -- -0.438 -- 1.44 0.366 -- 10.02 2866 -- --
21.36 0.217 13 0.574 0.366 -- -0.177 -- 0.181 19.8 -- -- -- --
21.45 0.217 13 0.578 0.365 -- -- -- 0.181 19.9 -- -- -- --
23.87 0.228 13 0.864 -- -0.542 -- -- 0.338 -- 10.09 8677 -- --
28.89 0.25 13 -- 0.447 -0.254 -- -- 0.145 19.7 19.79 435 -- --
28.7 0.25 13 0.574 -- -- -- -- 0.176 -- -- -- -- --
30.26 0.257 13 -- 0.361 -- -- -- 0.116 20 -- -- -- --
34.21 0.272 13.1 -- -- 0.267 -- -- 0.0177 -- 19 47520 -- --
37.4 0.285 13 -- -- -- -- -- 0.112 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 14.18 temperature 30 720 < th dose dependent rect. 20 19
9 14.31 temperature 15 720 > th dose dependent rect. 21 21
11 14.31 temperature 10 720 > th dose dependent rect. 19 23
12 14.32 temperature 15 720 > th dose dependent rect. 23 19
26 14.44 temperature 15 720 > th dose dependent rect. 16 19
30 14.45 temperature 10 720 > th dose dependent rect. 14 23
32 14.46 temperature 10 720 > th dose dependent rect. 16 23
35 14.47 temperature 15 720 > th dose dependent rect. 19 20
36 14.47 temperature 15 720 > th dose dependent rect. 14 21
42 14.49 temperature 15 720 > th dose dependent rect. 16 21
53 14.52 temperature 10 720 > th dose dependent rect. 19 16
60 14.53 temperature 10 720 > th dose dependent rect. 12 23
86 14.59 temperature 10 720 > th dose dependent rect. 8 23
95 14.61 wind 9 43200 > th dose dependent rect. 17 11
96 14.62 wind 9 43200 > th dose dependent rect. 17 7
104 14.63 temperature 10 720 > th dose dependent no NA NA
122 14.65 temperature 10 720 > th dose dependent rect. 10 23
129 14.67 wind 5 43200 > th dose independent rect. 23 1
130 14.67 temperature 10 1440 > th dose dependent sin 15 NA
132 14.67 temperature 10 1440 > th dose dependent rect. 17 9
133 14.67 temperature 30 1440 < th dose dependent rect. 17 9
134 14.67 temperature 10 1440 > th dose dependent rect. 15 11
155 14.68 temperature 30 1440 < th dose dependent rect. 17 7
196 14.69 temperature 10 720 > th dose dependent rect. 3 23
197 14.69 temperature 10 720 > th dose dependent rect. 6 23
200 14.70 wind 5 43200 < th dose independent rect. 23 1
226 14.71 wind 9 43200 < th dose independent rect. 19 5
227 14.71 humidity 60 43200 > th dose independent rect. 15 19
246 14.72 wind 9 43200 > th dose independent rect. 19 5
292 14.74 temperature 30 1440 < th dose dependent sin 15 NA
320 14.75 wind 9 43200 > th dose independent rect. 19 9
321 14.75 humidity 60 43200 < th dose independent rect. 14 20
358 14.76 wind 9 43200 > th dose dependent rect. 19 9
382 14.77 humidity 60 43200 > th dose independent rect. 15 15
386 14.77 wind 9 43200 > th dose dependent rect. 19 5
414 14.78 wind 9 43200 < th dose independent rect. 19 9
445 14.79 humidity 60 43200 > th dose independent rect. 15 12
550 14.81 temperature 30 270 < th dose dependent rect. 1 22
560 14.82 humidity 60 43200 > th dose independent rect. 16 8
568 14.82 temperature 10 1440 > th dose dependent rect. 20 1
621 14.83 radiation 1 14400 < th dose independent rect. 18 12
622 14.83 humidity 60 43200 < th dose independent rect. 15 15
625 14.83 temperature 25 1440 < th dose dependent rect. 22 1
670 14.84 wind 9 43200 > th dose independent rect. 17 11
723 14.85 temperature 30 720 < th dose dependent sin 8 NA
729 14.85 humidity 80 14400 > th dose dependent rect. 19 9
761 14.86 humidity 60 43200 < th dose independent rect. 15 11
808 14.87 temperature 10 720 > th dose dependent sin 9 NA
811 14.87 humidity 60 43200 < th dose dependent rect. 15 1
873 14.88 humidity 80 14400 > th dose dependent rect. 18 12
901 14.89 humidity 60 43200 > th dose independent sin 13 NA
902 14.89 wind 9 43200 > th dose independent rect. 17 7
904 14.89 humidity 60 43200 < th dose independent rect. 16 8
906 14.89 wind 9 43200 < th dose independent rect. 17 11
913 14.89 humidity 60 43200 < th dose dependent rect. 14 3
954 14.90 radiation 1 14400 < th dose independent rect. 18 14
959 14.90 temperature 30 720 < th dose dependent no NA NA