BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0430200 Os08g0430200|AK064881
(406 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0430200 UV excision repair protein Rad23 family protein 583 e-167
Os09g0407200 Similar to RAD23, isoform I 439 e-123
Os06g0264300 Similar to RAD23, isoform I 357 7e-99
Os02g0179300 Similar to RAD23 protein, isoform II 243 1e-64
Os02g0465112 Similar to RAD23 protein, isoform II 112 4e-25
>Os08g0430200 UV excision repair protein Rad23 family protein
Length = 406
Score = 583 bits (1503), Expect = e-167, Method: Compositional matrix adjust.
Identities = 307/406 (75%), Positives = 307/406 (75%)
Query: 1 MKVSIKTLKGSSFEIDVEPTSKVSDVKKLIEVTQGDNVYPADQQMLIHQGNVLKNDTTLE 60
MKVSIKTLKGSSFEIDVEPTSKVSDVKKLIEVTQGDNVYPADQQMLIHQGNVLKNDTTLE
Sbjct: 1 MKVSIKTLKGSSFEIDVEPTSKVSDVKKLIEVTQGDNVYPADQQMLIHQGNVLKNDTTLE 60
Query: 61 ENKVVENNFIVIMLXXXXXXXXXXXXXXEPTKQPSVDRAIXXXXXXXXXXXXXXXXXXXX 120
ENKVVENNFIVIML EPTKQPSVDRAI
Sbjct: 61 ENKVVENNFIVIMLSKKGSSSAASSTAKEPTKQPSVDRAIPTAPATQPPAPPAPVSEPVT 120
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXDNYGQAASNLVAGSNLEGTVQSILEMGGGAWDRDTVM 180
DNYGQAASNLVAGSNLEGTVQSILEMGGGAWDRDTVM
Sbjct: 121 APVPTATTASAPAAAVTAASTEADNYGQAASNLVAGSNLEGTVQSILEMGGGAWDRDTVM 180
Query: 181 RALRAAYNNPERAVEYLYTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
RALRAAYNNPERAVEYLYTG
Sbjct: 181 RALRAAYNNPERAVEYLYTGVPEQAEAPAAVQALPVPAAVQALPVPAAVQPVDPSQAPQS 240
Query: 241 XXLSIPSSGPNANPLDLFPQVLPNASANAGGGNLDVLRNNSQFRGLLSLVQANPQILQPL 300
LSIPSSGPNANPLDLFPQVLPNASANAGGGNLDVLRNNSQFRGLLSLVQANPQILQPL
Sbjct: 241 AQLSIPSSGPNANPLDLFPQVLPNASANAGGGNLDVLRNNSQFRGLLSLVQANPQILQPL 300
Query: 301 LQELGKQNPQILQLIQENQAEFLRLINEPAEGAEGNLLDQFAAGMPQTVAVTPEENEAIQ 360
LQELGKQNPQILQLIQENQAEFLRLINEPAEGAEGNLLDQFAAGMPQTVAVTPEENEAIQ
Sbjct: 301 LQELGKQNPQILQLIQENQAEFLRLINEPAEGAEGNLLDQFAAGMPQTVAVTPEENEAIQ 360
Query: 361 RLEQMGFDRDLVLEVFFACNKDELLAANYLLDHMNEFDDDAPEPPQ 406
RLEQMGFDRDLVLEVFFACNKDELLAANYLLDHMNEFDDDAPEPPQ
Sbjct: 361 RLEQMGFDRDLVLEVFFACNKDELLAANYLLDHMNEFDDDAPEPPQ 406
>Os09g0407200 Similar to RAD23, isoform I
Length = 392
Score = 439 bits (1129), Expect = e-123, Method: Compositional matrix adjust.
Identities = 236/405 (58%), Positives = 267/405 (65%), Gaps = 17/405 (4%)
Query: 1 MKVSIKTLKGSSFEIDVEPTSKVSDVKKLIEVTQGDNVYPADQQMLIHQGNVLKNDTTLE 60
MK+S+KTLKGS+F+I+V+ KV+DVK++IE TQG ++YPA+QQMLIHQG VLK+DTTL+
Sbjct: 1 MKISVKTLKGSTFQIEVDSAQKVADVKRIIETTQGQHIYPAEQQMLIHQGKVLKDDTTLD 60
Query: 61 ENKVVENNFIVIMLXXXXXXXXXXXXXXE-PTKQPSVDRAIXXXXXXXXXXXXXXXXXXX 119
ENKV+EN+F+VIML + P+ Q + +
Sbjct: 61 ENKVLENSFLVIMLRQGKGSSSSAPATSKAPSNQAPPTQTVPAAPASQAPVAPATTVPVT 120
Query: 120 XXXXXXXXXXXXXXXXXXXXXXXXDNYGQAASNLVAGSNLEGTVQSILEMGGGAWDRDTV 179
DNYGQA SNLVAGSNLE T+QSILEMGGG WDRD V
Sbjct: 121 VSAPTPTATASPAPAVAVSSEA--DNYGQATSNLVAGSNLEATIQSILEMGGGIWDRDIV 178
Query: 180 MRALRAAYNNPERAVEYLYTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 239
+ AL AA+NNPERAVEYLY+G
Sbjct: 179 LHALSAAFNNPERAVEYLYSGVPEQMDIPVPPPSIQPANPTQASQATQPAAP-------- 230
Query: 240 XXXLSIPSSGPNANPLDLFPQVLPNASANAGG-GNLDVLRNNSQFRGLLSLVQANPQILQ 298
SI SSGPNA+PLDLFPQ LPNAS +A G GNLD LRNN+QFR LLSLVQANPQILQ
Sbjct: 231 ----SILSSGPNASPLDLFPQALPNASTDAAGLGNLDALRNNAQFRTLLSLVQANPQILQ 286
Query: 299 PLLQELGKQNPQILQLIQENQAEFLRLINEPAEGA-EGNLLDQFAAGMPQTVAVTPEENE 357
PLLQELGKQNPQILQLIQENQAEFL LINEPAEG E NLLDQF MPQT+AVTPEENE
Sbjct: 287 PLLQELGKQNPQILQLIQENQAEFLHLINEPAEGDDEENLLDQFPEAMPQTIAVTPEENE 346
Query: 358 AIQRLEQMGFDRDLVLEVFFACNKDELLAANYLLDHMNEFDDDAP 402
AI RLE MGFDR LVL+VFFACNKDE LAANYLLDHMNEFDD+ P
Sbjct: 347 AILRLEAMGFDRALVLDVFFACNKDEQLAANYLLDHMNEFDDEGP 391
>Os06g0264300 Similar to RAD23, isoform I
Length = 413
Score = 357 bits (917), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 208/415 (50%), Positives = 249/415 (60%), Gaps = 20/415 (4%)
Query: 1 MKVSIKTLKGSSFEIDVEPTSKVSDVKKLIEVTQGDNVYPADQQMLIHQGNVLKNDTTLE 60
MK+ +KTLKG++FEI+ P + V++VK++IE TQG NVYPADQQMLIHQG +LK+DTTLE
Sbjct: 1 MKLFVKTLKGTNFEIEASPEASVAEVKRIIESTQGQNVYPADQQMLIHQGKILKDDTTLE 60
Query: 61 ENKVVENN-FIVIMLXXXXXXXXXXXXXXEPTKQ-----PSVDRAIXXXXXXXXXXXXXX 114
NKV EN+ ++++ P Q P A
Sbjct: 61 GNKVAENSFLVIMLSKAKASSSGASTASKAPVSQSQPATPVASVARTPPPQAPVVTPEPA 120
Query: 115 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXDNYGQAASNLVAGSNLEGTVQSILEMGGGAW 174
D Y QAASNLV+GSNLE T+Q IL+MGGG W
Sbjct: 121 PPSAQPPVASATPAAAATPAAAVTASSDADVYSQAASNLVSGSNLEQTIQQILDMGGGTW 180
Query: 175 DRDTVMRALRAAYNNPERAVEYLYTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 234
+RD V+RALRAAYNNPERA++YLY+G
Sbjct: 181 ERDMVVRALRAAYNNPERAIDYLYSGIPENVEPPQPVARAPAAVQQGNPQVPSQAQAAPP 240
Query: 235 XXXXXXXXLSIPSSGPNANPLDLFPQVLPNASAN--------AGGGNLDVLRNNSQFRGL 286
+SGPNANPL+LFPQ +P+A +N AG G LD LR QF+ L
Sbjct: 241 PPVQPAGG----ASGPNANPLNLFPQGIPSAGSNPGAAAGAGAGAGALDALRQLPQFQAL 296
Query: 287 LSLVQANPQILQPLLQELGKQNPQILQLIQENQAEFLRLINE-PAEGAEG-NLLDQFAAG 344
L+LVQANPQILQP+LQELGKQNPQIL+LIQENQAEFLRL+NE P GA G N+L Q AA
Sbjct: 297 LALVQANPQILQPMLQELGKQNPQILRLIQENQAEFLRLVNESPDSGAAGGNILGQLAAA 356
Query: 345 MPQTVAVTPEENEAIQRLEQMGFDRDLVLEVFFACNKDELLAANYLLDHMNEFDD 399
MPQ + VTPEE EAIQRLE MGF+R+LVLEVFFACNKDE LAANYLLDH +EF+D
Sbjct: 357 MPQALTVTPEEREAIQRLEAMGFNRELVLEVFFACNKDEELAANYLLDHGHEFED 411
>Os02g0179300 Similar to RAD23 protein, isoform II
Length = 369
Score = 243 bits (621), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 134/254 (52%), Positives = 164/254 (64%), Gaps = 18/254 (7%)
Query: 146 YGQAASNLVAGSNLEGTVQSILEMGGGAWDRDTVMRALRAAYNNPERAVEYLYTGXXXXX 205
YGQAASNL++GSNL+ T+ ++EMGGG+WDRD V RALRAAYNNPERAVEYLY+G
Sbjct: 133 YGQAASNLLSGSNLDTTINQLMEMGGGSWDRDKVQRALRAAYNNPERAVEYLYSGIPITA 192
Query: 206 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSIPSSGPNANPLDLFPQVLPNA 265
S PNA+PL+LFPQ N
Sbjct: 193 EVAVPAGGQGANTTEPSSTREASL-----------------SGIPNASPLNLFPQGDAND 235
Query: 266 SANAGGGNLDVLRNNSQFRGLLSLVQANPQILQPLLQELGKQNPQILQLIQENQAEFLRL 325
AGGG L+ LR+N QF+ L +V NPQILQP+LQEL K+NPQ+L+LIQEN EFL+L
Sbjct: 236 GGGAGGGTLEFLRHNQQFQALREMVHTNPQILQPMLQELSKKNPQLLRLIQENHDEFLQL 295
Query: 326 INEPAEGAEGNLLDQFAAG-MPQTVAVTPEENEAIQRLEQMGFDRDLVLEVFFACNKDEL 384
INEP +GA+G+ LDQ MP ++ VTPEE EAI RLE MGFDR V+E FFAC+++E
Sbjct: 296 INEPFDGADGDFLDQPDQDEMPHSINVTPEEQEAIGRLEGMGFDRARVIEAFFACDRNEQ 355
Query: 385 LAANYLLDHMNEFD 398
LAANYLL+H + D
Sbjct: 356 LAANYLLEHAADED 369
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 56/74 (75%)
Query: 1 MKVSIKTLKGSSFEIDVEPTSKVSDVKKLIEVTQGDNVYPADQQMLIHQGNVLKNDTTLE 60
MK+++KTLKG+ FEI V+P + VKK+IE QG + YP QQ+LIH G VLK+++TLE
Sbjct: 1 MKLTVKTLKGTQFEIRVQPNDTIMAVKKIIEEIQGKDSYPWGQQLLIHNGKVLKDESTLE 60
Query: 61 ENKVVENNFIVIML 74
ENKV E F+V+ML
Sbjct: 61 ENKVSEVGFLVVML 74
>Os02g0465112 Similar to RAD23 protein, isoform II
Length = 92
Score = 112 bits (281), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 54/57 (94%), Positives = 54/57 (94%)
Query: 144 DNYGQAASNLVAGSNLEGTVQSILEMGGGAWDRDTVMRALRAAYNNPERAVEYLYTG 200
D YG AASNLVAGSNLEGTVQSILEMGGGAWDRDTVMRAL AAYNNPERAVEYLYTG
Sbjct: 9 DIYGLAASNLVAGSNLEGTVQSILEMGGGAWDRDTVMRALGAAYNNPERAVEYLYTG 65
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.132 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,475,071
Number of extensions: 360140
Number of successful extensions: 786
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 783
Number of HSP's successfully gapped: 13
Length of query: 406
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 303
Effective length of database: 11,657,759
Effective search space: 3532300977
Effective search space used: 3532300977
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 157 (65.1 bits)