Os02g0179300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to RAD23 protein, isoform II.
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Os02g0179300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to RAD23 protein, isoform II.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 10.86 | 0.155 | 10.5 | 0.0366 | 0.639 | 0.506 | -0.0649 | -0.268 | -0.075 | 16.4 | 16.76 | 7682 | -- | -- |
| 10.9 | 0.154 | 10.5 | 0.0994 | 0.636 | 0.544 | -0.0579 | -- | -0.0555 | 16.4 | 15.82 | 7719 | -- | -- |
| 10.87 | 0.154 | 10.5 | 0.0342 | 0.638 | 0.503 | -- | -0.276 | -0.0761 | 16.4 | 16.86 | 7681 | -- | -- |
| 10.91 | 0.154 | 10.5 | 0.0982 | 0.636 | 0.543 | -- | -- | -0.0567 | 16.4 | 15.81 | 7719 | -- | -- |
| 23.32 | 0.226 | 10.5 | 0.114 | -- | 0.868 | -- | -0.493 | -0.0647 | -- | 18.01 | 7684 | -- | -- |
| 16.71 | 0.192 | 10.5 | 0.391 | 0.636 | -- | -0.089 | -- | 0.108 | 16.5 | -- | -- | -- | -- |
| 16.73 | 0.192 | 10.5 | 0.39 | 0.635 | -- | -- | -- | 0.108 | 16.5 | -- | -- | -- | -- |
| 23.58 | 0.227 | 10.5 | 0.194 | -- | 0.85 | -- | -- | -0.0419 | -- | 18.01 | 7684 | -- | -- |
| 10.96 | 0.154 | 10.5 | -- | 0.65 | 0.591 | -- | -- | -0.0978 | 16.4 | 14.99 | 11283 | -- | -- |
| 38.3 | 0.289 | 10.5 | 0.365 | -- | -- | -- | -- | 0.0909 | -- | -- | -- | -- | -- |
| 20.73 | 0.213 | 10.5 | -- | 0.628 | -- | -- | -- | 0.0642 | 16.5 | -- | -- | -- | -- |
| 20.75 | 0.212 | 10.5 | -- | -- | 0.976 | -- | -- | -0.077 | -- | 18 | 209 | -- | -- |
| 41.81 | 0.302 | 10.5 | -- | -- | -- | -- | -- | 0.0504 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 10.69 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 11 | 10.70 | temperature | 20 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 13 | 10.74 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 7 |
| 14 | 10.75 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 24 | 10.78 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 28 | 10.83 | temperature | 10 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 38 | 10.89 | temperature | 30 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 43 | 10.90 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 14 |
| 44 | 10.91 | temperature | 20 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 49 | 10.92 | radiation | 20 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 55 | 10.92 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 4 |
| 74 | 10.94 | temperature | 30 | 4320 | < th | dose dependent | rect. | 9 | 1 |
| 75 | 10.94 | humidity | 80 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 77 | 10.95 | temperature | 10 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 111 | 10.97 | temperature | 30 | 14400 | < th | dose dependent | rect. | 17 | 6 |
| 115 | 10.97 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 7 |
| 125 | 10.98 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 3 |
| 139 | 10.98 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 11 |
| 141 | 10.98 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 14 |
| 142 | 10.99 | radiation | 1 | 720 | < th | dose dependent | sin | 12 | NA |
| 182 | 11.00 | humidity | 90 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 203 | 11.00 | radiation | 1 | 720 | < th | dose dependent | rect. | 16 | 17 |
| 204 | 11.01 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 208 | 11.01 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 209 | 11.01 | temperature | 10 | 14400 | > th | dose dependent | rect. | 21 | 2 |
| 210 | 11.01 | temperature | 30 | 14400 | < th | dose dependent | rect. | 21 | 2 |
| 241 | 11.02 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 243 | 11.02 | temperature | 10 | 14400 | > th | dose dependent | sin | 16 | NA |
| 275 | 11.02 | radiation | 1 | 720 | < th | dose dependent | rect. | 16 | 20 |
| 304 | 11.03 | temperature | 20 | 4320 | > th | dose dependent | rect. | 8 | 10 |
| 325 | 11.04 | radiation | 20 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 380 | 11.05 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 427 | 11.06 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 432 | 11.06 | temperature | 30 | 14400 | < th | dose dependent | sin | 15 | NA |
| 484 | 11.07 | temperature | 25 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 485 | 11.07 | temperature | 25 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 486 | 11.07 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 488 | 11.07 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 6 |
| 497 | 11.07 | radiation | 1 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 634 | 11.09 | temperature | 20 | 4320 | > th | dose dependent | sin | 23 | NA |
| 662 | 11.09 | temperature | 10 | 4320 | > th | dose dependent | rect. | 7 | 12 |
| 671 | 11.09 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 14 |
| 696 | 11.10 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 5 |
| 901 | 11.12 | temperature | 10 | 14400 | > th | dose dependent | no | NA | NA |
| 991 | 11.12 | temperature | 10 | 14400 | > th | dose dependent | rect. | 2 | 21 |