BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0179300 Os02g0179300|AK069065
(369 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0179300 Similar to RAD23 protein, isoform II 684 0.0
Os09g0407200 Similar to RAD23, isoform I 334 7e-92
Os08g0430200 UV excision repair protein Rad23 family protein 327 6e-90
Os06g0264300 Similar to RAD23, isoform I 318 3e-87
Os02g0465112 Similar to RAD23 protein, isoform II 98 1e-20
>Os02g0179300 Similar to RAD23 protein, isoform II
Length = 369
Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/369 (91%), Positives = 338/369 (91%)
Query: 1 MKLTVKTLKGTQFEIRVQPNDTIMAVKKIIEEIQGKDSYPWGQQLLIHNGKVLKDESTLE 60
MKLTVKTLKGTQFEIRVQPNDTIMAVKKIIEEIQGKDSYPWGQQLLIHNGKVLKDESTLE
Sbjct: 1 MKLTVKTLKGTQFEIRVQPNDTIMAVKKIIEEIQGKDSYPWGQQLLIHNGKVLKDESTLE 60
Query: 61 ENKVSEVGFLVVMLXXXXXXXXXXXXXXXXXXXPLTRQETPADASRAAPQPLVAPTRTPQ 120
ENKVSEVGFLVVML PLTRQETPADASRAAPQPLVAPTRTPQ
Sbjct: 61 ENKVSEVGFLVVMLSKSKASGSSGALSSLTSSTPLTRQETPADASRAAPQPLVAPTRTPQ 120
Query: 121 PERPPAEAPSNAYGQAASNLLSGSNLDTTINQLMEMGGGSWDRDKVQRALRAAYNNPERA 180
PERPPAEAPSNAYGQAASNLLSGSNLDTTINQLMEMGGGSWDRDKVQRALRAAYNNPERA
Sbjct: 121 PERPPAEAPSNAYGQAASNLLSGSNLDTTINQLMEMGGGSWDRDKVQRALRAAYNNPERA 180
Query: 181 VEYLYSGIPITAEVAVPAGGQGANTTEPSSTREASLSGIPNASPLNLFPQXXXXXXXXXX 240
VEYLYSGIPITAEVAVPAGGQGANTTEPSSTREASLSGIPNASPLNLFPQ
Sbjct: 181 VEYLYSGIPITAEVAVPAGGQGANTTEPSSTREASLSGIPNASPLNLFPQGDANDGGGAG 240
Query: 241 XXTLEFLRHNQQFQALREMVHTNPQILQPMLQELSKKNPQLLRLIQENHDEFLQLINEPF 300
TLEFLRHNQQFQALREMVHTNPQILQPMLQELSKKNPQLLRLIQENHDEFLQLINEPF
Sbjct: 241 GGTLEFLRHNQQFQALREMVHTNPQILQPMLQELSKKNPQLLRLIQENHDEFLQLINEPF 300
Query: 301 DGADGDFLDQPDQDEMPHSINVTPEEQEAIGRLEGMGFDRARVIEAFFACDRNEQLAANY 360
DGADGDFLDQPDQDEMPHSINVTPEEQEAIGRLEGMGFDRARVIEAFFACDRNEQLAANY
Sbjct: 301 DGADGDFLDQPDQDEMPHSINVTPEEQEAIGRLEGMGFDRARVIEAFFACDRNEQLAANY 360
Query: 361 LLEHAADED 369
LLEHAADED
Sbjct: 361 LLEHAADED 369
>Os09g0407200 Similar to RAD23, isoform I
Length = 392
Score = 334 bits (856), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 195/382 (51%), Positives = 243/382 (63%), Gaps = 18/382 (4%)
Query: 1 MKLTVKTLKGTQFEIRVQPNDTIMAVKKIIEEIQGKDSYPWGQQLLIHNGKVLKDESTLE 60
MK++VKTLKG+ F+I V + VK+IIE QG+ YP QQ+LIH GKVLKD++TL+
Sbjct: 1 MKISVKTLKGSTFQIEVDSAQKVADVKRIIETTQGQHIYPAEQQMLIHQGKVLKDDTTLD 60
Query: 61 ENKVSEVGFLVVMLX--XXXXXXXXXXXXXXXXXXPLTRQETPADASRA-------APQP 111
ENKV E FLV+ML P T+ A AS+A P
Sbjct: 61 ENKVLENSFLVIMLRQGKGSSSSAPATSKAPSNQAPPTQTVPAAPASQAPVAPATTVPVT 120
Query: 112 LVAPTRTPQPERPPAEAPS---NAYGQAASNLLSGSNLDTTINQLMEMGGGSWDRDKVQR 168
+ APT T PA A S + YGQA SNL++GSNL+ TI ++EMGGG WDRD V
Sbjct: 121 VSAPTPTATASPAPAVAVSSEADNYGQATSNLVAGSNLEATIQSILEMGGGIWDRDIVLH 180
Query: 169 ALRAAYNNPERAVEYLYSGIPITAEVAVPAGG-QGANTTEPS-STREAS---LSGIPNAS 223
AL AA+NNPERAVEYLYSG+P ++ VP Q AN T+ S +T+ A+ LS PNAS
Sbjct: 181 ALSAAFNNPERAVEYLYSGVPEQMDIPVPPPSIQPANPTQASQATQPAAPSILSSGPNAS 240
Query: 224 PLNLFPQXX-XXXXXXXXXXTLEFLRHNQQFQALREMVHTNPQILQPMLQELSKKNPQLL 282
PL+LFPQ L+ LR+N QF+ L +V NPQILQP+LQEL K+NPQ+L
Sbjct: 241 PLDLFPQALPNASTDAAGLGNLDALRNNAQFRTLLSLVQANPQILQPLLQELGKQNPQIL 300
Query: 283 RLIQENHDEFLQLINEPFDGADGDFLDQPDQDEMPHSINVTPEEQEAIGRLEGMGFDRAR 342
+LIQEN EFL LINEP +G D + L + MP +I VTPEE EAI RLE MGFDRA
Sbjct: 301 QLIQENQAEFLHLINEPAEGDDEENLLDQFPEAMPQTIAVTPEENEAILRLEAMGFDRAL 360
Query: 343 VIEAFFACDRNEQLAANYLLEH 364
V++ FFAC+++EQLAANYLL+H
Sbjct: 361 VLDVFFACNKDEQLAANYLLDH 382
>Os08g0430200 UV excision repair protein Rad23 family protein
Length = 406
Score = 327 bits (839), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 189/399 (47%), Positives = 245/399 (61%), Gaps = 31/399 (7%)
Query: 1 MKLTVKTLKGTQFEIRVQPNDTIMAVKKIIEEIQGKDSYPWGQQLLIHNGKVLKDESTLE 60
MK+++KTLKG+ FEI V+P + VKK+IE QG + YP QQ+LIH G VLK+++TLE
Sbjct: 1 MKVSIKTLKGSSFEIDVEPTSKVSDVKKLIEVTQGDNVYPADQQMLIHQGNVLKNDTTLE 60
Query: 61 ENKVSEVGFLVVMLXXXXXXXXXXXXXXXXXXXPLTRQ-------ETPADASRAAPQPLV 113
ENKV E F+V+ML P + P +P+
Sbjct: 61 ENKVVENNFIVIMLSKKGSSSAASSTAKEPTKQPSVDRAIPTAPATQPPAPPAPVSEPVT 120
Query: 114 APTRTPQPERPPAEAPS------NAYGQAASNLLSGSNLDTTINQLMEMGGGSWDRDKVQ 167
AP T PA A + + YGQAASNL++GSNL+ T+ ++EMGGG+WDRD V
Sbjct: 121 APVPTATTASAPAAAVTAASTEADNYGQAASNLVAGSNLEGTVQSILEMGGGAWDRDTVM 180
Query: 168 RALRAAYNNPERAVEYLYSGIPITAE----------------VAVPAGGQGANTTE-PSS 210
RALRAAYNNPERAVEYLY+G+P AE + VPA Q + ++ P S
Sbjct: 181 RALRAAYNNPERAVEYLYTGVPEQAEAPAAVQALPVPAAVQALPVPAAVQPVDPSQAPQS 240
Query: 211 TREASLSGIPNASPLNLFPQXXXXXXXXXXXXTLEFLRHNQQFQALREMVHTNPQILQPM 270
+ + S PNA+PL+LFPQ L+ LR+N QF+ L +V NPQILQP+
Sbjct: 241 AQLSIPSSGPNANPLDLFPQVLPNASANAGGGNLDVLRNNSQFRGLLSLVQANPQILQPL 300
Query: 271 LQELSKKNPQLLRLIQENHDEFLQLINEPFDGADGDFLDQPDQDEMPHSINVTPEEQEAI 330
LQEL K+NPQ+L+LIQEN EFL+LINEP +GA+G+ LDQ MP ++ VTPEE EAI
Sbjct: 301 LQELGKQNPQILQLIQENQAEFLRLINEPAEGAEGNLLDQ-FAAGMPQTVAVTPEENEAI 359
Query: 331 GRLEGMGFDRARVIEAFFACDRNEQLAANYLLEHAADED 369
RLE MGFDR V+E FFAC+++E LAANYLL+H + D
Sbjct: 360 QRLEQMGFDRDLVLEVFFACNKDELLAANYLLDHMNEFD 398
>Os06g0264300 Similar to RAD23, isoform I
Length = 413
Score = 318 bits (816), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 194/411 (47%), Positives = 241/411 (58%), Gaps = 51/411 (12%)
Query: 1 MKLTVKTLKGTQFEIRVQPNDTIMAVKKIIEEIQGKDSYPWGQQLLIHNGKVLKDESTLE 60
MKL VKTLKGT FEI P ++ VK+IIE QG++ YP QQ+LIH GK+LKD++TLE
Sbjct: 1 MKLFVKTLKGTNFEIEASPEASVAEVKRIIESTQGQNVYPADQQMLIHQGKILKDDTTLE 60
Query: 61 ENKVSEVGFLVVMLXXXXXXXXXXXXXXXXXXXPLTRQE--TPADASRAAPQPLVAPTRT 118
NKV+E FLV+ML P+++ + TP AS A P AP T
Sbjct: 61 GNKVAENSFLVIMLSKAKASSSGASTASKA---PVSQSQPATPV-ASVARTPPPQAPVVT 116
Query: 119 PQPERPPAE---------------------APSNAYGQAASNLLSGSNLDTTINQLMEMG 157
P+P P A+ + ++ Y QAASNL+SGSNL+ TI Q+++MG
Sbjct: 117 PEPAPPSAQPPVASATPAAAATPAAAVTASSDADVYSQAASNLVSGSNLEQTIQQILDMG 176
Query: 158 GGSWDRDKVQRALRAAYNNPERAVEYLYSGIPITAE-----VAVPAGGQGAN-------- 204
GG+W+RD V RALRAAYNNPERA++YLYSGIP E PA Q N
Sbjct: 177 GGTWERDMVVRALRAAYNNPERAIDYLYSGIPENVEPPQPVARAPAAVQQGNPQVPSQAQ 236
Query: 205 -TTEPSSTREASLSGIPNASPLNLFPQXXXXXXX--------XXXXXTLEFLRHNQQFQA 255
P SG PNA+PLNLFPQ L+ LR QFQA
Sbjct: 237 AAPPPPVQPAGGASG-PNANPLNLFPQGIPSAGSNPGAAAGAGAGAGALDALRQLPQFQA 295
Query: 256 LREMVHTNPQILQPMLQELSKKNPQLLRLIQENHDEFLQLINE-PFDGADGDFLDQPDQD 314
L +V NPQILQPMLQEL K+NPQ+LRLIQEN EFL+L+NE P GA G +
Sbjct: 296 LLALVQANPQILQPMLQELGKQNPQILRLIQENQAEFLRLVNESPDSGAAGGNILGQLAA 355
Query: 315 EMPHSINVTPEEQEAIGRLEGMGFDRARVIEAFFACDRNEQLAANYLLEHA 365
MP ++ VTPEE+EAI RLE MGF+R V+E FFAC+++E+LAANYLL+H
Sbjct: 356 AMPQALTVTPEEREAIQRLEAMGFNRELVLEVFFACNKDEELAANYLLDHG 406
>Os02g0465112 Similar to RAD23 protein, isoform II
Length = 92
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 43/63 (68%), Positives = 53/63 (84%)
Query: 133 YGQAASNLLSGSNLDTTINQLMEMGGGSWDRDKVQRALRAAYNNPERAVEYLYSGIPITA 192
YG AASNL++GSNL+ T+ ++EMGGG+WDRD V RAL AAYNNPERAVEYLY+G+P A
Sbjct: 11 YGLAASNLVAGSNLEGTVQSILEMGGGAWDRDTVMRALGAAYNNPERAVEYLYTGLPGQA 70
Query: 193 EVA 195
E +
Sbjct: 71 EAS 73
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.131 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,958,853
Number of extensions: 521381
Number of successful extensions: 3299
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 3286
Number of HSP's successfully gapped: 5
Length of query: 369
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 267
Effective length of database: 11,709,973
Effective search space: 3126562791
Effective search space used: 3126562791
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 157 (65.1 bits)