Os08g0430200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : UV excision repair protein Rad23 family protein.
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Os08g0430200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : UV excision repair protein Rad23 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15.44 | 0.185 | 11.6 | 0.134 | 0.426 | 0.263 | -0.199 | 0.572 | 0.179 | 21.3 | 0.5186 | 4516 | -- | -- |
| 14.88 | 0.18 | 11.6 | 0.0624 | 0.445 | 0.456 | -0.119 | -- | 0.184 | 21.6 | 0.8637 | 13854 | -- | -- |
| 15.58 | 0.184 | 11.6 | 0.133 | 0.427 | 0.285 | -- | 0.485 | 0.178 | 21.4 | 0.4975 | 4562 | -- | -- |
| 14.91 | 0.18 | 11.6 | 0.0466 | 0.43 | 0.418 | -- | -- | 0.182 | 21.4 | 1.181 | 16874 | -- | -- |
| 25.74 | 0.236 | 11.6 | 0.101 | -- | 0.458 | -- | -0.0941 | 0.157 | -- | 1.058 | 2085 | -- | -- |
| 19.55 | 0.207 | 11.6 | 0.233 | 0.434 | -- | -0.154 | -- | 0.148 | 21.4 | -- | -- | -- | -- |
| 19.64 | 0.208 | 11.6 | 0.239 | 0.434 | -- | -- | -- | 0.148 | 21.4 | -- | -- | -- | -- |
| 25.65 | 0.236 | 11.6 | 0.0625 | -- | 0.398 | -- | -- | 0.184 | -- | 1.792 | 15245 | -- | -- |
| 14.97 | 0.18 | 11.6 | -- | 0.43 | 0.43 | -- | -- | 0.186 | 21.5 | 1.155 | 16874 | -- | -- |
| 30.71 | 0.259 | 11.6 | 0.242 | -- | -- | -- | -- | 0.147 | -- | -- | -- | -- | -- |
| 21.14 | 0.215 | 11.6 | -- | 0.435 | -- | -- | -- | 0.122 | 21.5 | -- | -- | -- | -- |
| 25.76 | 0.236 | 11.6 | -- | -- | 0.399 | -- | -- | 0.184 | -- | 1.912 | 15246 | -- | -- |
| 32.25 | 0.265 | 11.6 | -- | -- | -- | -- | -- | 0.12 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.11 | radiation | 30.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 2 | 14.15 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 5 | 14.31 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 24 | 2 |
| 7 | 14.33 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 8 | 4 |
| 9 | 14.37 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 11 | 14.38 | wind | 1.0 | 43200 | < th | dose independent | rect. | 24 | 2 |
| 12 | 14.38 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 9 | 4 |
| 13 | 14.40 | radiation | 20.0 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 15 | 14.44 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 25 | 14.50 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 20 | 10 |
| 31 | 14.55 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 20 | 10 |
| 54 | 14.59 | wind | 9.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 69 | 14.61 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 20 | 10 |
| 72 | 14.62 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 73 | 14.62 | temperature | 30.0 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 74 | 14.62 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 89 | 14.63 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 96 | 14.64 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 1 | 4 |
| 102 | 14.67 | wind | 1.0 | 43200 | > th | dose independent | rect. | 24 | 2 |
| 106 | 14.67 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 9 | 2 |
| 110 | 14.67 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 23 | 6 |
| 115 | 14.68 | radiation | 40.0 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 140 | 14.72 | temperature | 30.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 182 | 14.73 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 215 | 14.78 | radiation | 40.0 | 43200 | > th | dose independent | sin | 8 | NA |
| 219 | 14.78 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 228 | 14.80 | wind | 9.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 259 | 14.82 | wind | 3.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 269 | 14.83 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 272 | 14.83 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 5 | 4 |
| 326 | 14.86 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 20 | 13 |
| 338 | 14.86 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 339 | 14.86 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 441 | 14.91 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 17 | 17 |
| 464 | 14.93 | wind | 3.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 503 | 14.93 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 13 | 19 |
| 546 | 14.95 | radiation | 40.0 | 43200 | > th | dose independent | no | NA | NA |
| 736 | 14.98 | humidity | 80.0 | 43200 | < th | dose independent | sin | 10 | NA |
| 738 | 14.98 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 739 | 14.98 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 16 | 3 |
| 753 | 14.98 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 2 |
| 755 | 14.98 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 16 | 3 |
| 757 | 14.99 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 814 | 15.01 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 870 | 15.02 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 16 | 3 |
| 871 | 15.02 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 23 | 7 |
| 897 | 15.03 | radiation | 20.0 | 43200 | > th | dose independent | sin | 9 | NA |
| 931 | 15.04 | humidity | 80.0 | 43200 | > th | dose independent | sin | 10 | NA |
| 940 | 15.04 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 8 | 20 |
| 946 | 15.05 | wind | 9.0 | 14400 | > th | dose independent | rect. | 18 | 18 |
| 953 | 15.05 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 17 | 21 |