BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0430200 Os08g0430200|AK064881
(406 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G38470.1 | chr5:15404720-15407500 FORWARD LENGTH=379 374 e-104
AT3G02540.1 | chr3:533095-536151 REVERSE LENGTH=420 303 1e-82
AT1G79650.4 | chr1:29972406-29975132 REVERSE LENGTH=396 265 2e-71
AT1G16190.1 | chr1:5543267-5545892 FORWARD LENGTH=369 263 9e-71
AT5G16090.1 | chr5:5255797-5257230 REVERSE LENGTH=172 82 4e-16
>AT5G38470.1 | chr5:15404720-15407500 FORWARD LENGTH=379
Length = 378
Score = 374 bits (959), Expect = e-104, Method: Compositional matrix adjust.
Identities = 208/399 (52%), Positives = 248/399 (62%), Gaps = 22/399 (5%)
Query: 1 MKVSIKTLKGSSFEIDVEPTSKVSDVKKLIEVTQGDNVYPADQQMLIHQGNVLKNDTTLE 60
MK+ +KTL GS+FEI+V+P KVSDVK IE +G YPA +QMLIHQG VLK++TTLE
Sbjct: 1 MKIFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLE 59
Query: 61 ENKVVENNFIVIMLXXXXXXXXXXXXXXEPTKQPSVDRAIXXXXXXXXXXXXXXXXXXXX 120
EN VVEN+FIVIML P + + +
Sbjct: 60 ENNVVENSFIVIMLSKTKASPSGASTASAPAPSATQPQTVATPQVSAPTASVPVPTSGTA 119
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXDNYGQAASNLVAGSNLEGTVQSILEMGGGAWDRDTVM 180
D YGQAASNLVAG+ LE TVQ IL+MGGG+WDRDTV+
Sbjct: 120 TAAAPATAASVQT----------DVYGQAASNLVAGTTLESTVQQILDMGGGSWDRDTVV 169
Query: 181 RALRAAYNNPERAVEYLYTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
RALRAA+NNPERAVEYLY+G
Sbjct: 170 RALRAAFNNPERAVEYLYSGIPAQAEIPPVAQAPATGEQAANPLAQPQQAAAPAAA---- 225
Query: 241 XXLSIPSSGPNANPLDLFPQVLPNASANAGGGNLDVLRNNSQFRGLLSLVQANPQILQPL 300
+ GPNANPL+LFPQ +P A A AG GNLD LRN+ QF+ L ++VQANPQILQP+
Sbjct: 226 ------TGGPNANPLNLFPQGMPAADAGAGAGNLDFLRNSQQFQALRAMVQANPQILQPM 279
Query: 301 LQELGKQNPQILQLIQENQAEFLRLINEPAEGAEGNLLDQFAAGMPQTVAVTPEENEAIQ 360
LQELGKQNPQ+++LIQE+QA+FLRLINEP EG E N+++Q A MPQ V VTPEE EAI+
Sbjct: 280 LQELGKQNPQLVRLIQEHQADFLRLINEPVEGEE-NVMEQLEAAMPQAVTVTPEEREAIE 338
Query: 361 RLEQMGFDRDLVLEVFFACNKDELLAANYLLDHMNEFDD 399
RLE MGFDR +VLEVFFACNK+E LAANYLLDHM+EF+D
Sbjct: 339 RLEGMGFDRAMVLEVFFACNKNEELAANYLLDHMHEFED 377
>AT3G02540.1 | chr3:533095-536151 REVERSE LENGTH=420
Length = 419
Score = 303 bits (775), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 156/260 (60%), Positives = 182/260 (70%), Gaps = 16/260 (6%)
Query: 144 DNYGQAASNLVAGSNLEGTVQSILEMGGGAWDRDTVMRALRAAYNNPERAVEYLYTGXXX 203
D YGQAASNL AGSNLE T+Q IL+MGGG WDR+TV+ ALRAA+NNPERAVEYLYTG
Sbjct: 172 DVYGQAASNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYTGIPE 231
Query: 204 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSIPSSGPNANPLDLFPQVLP 263
+ P+SGPNANPLDLFPQ LP
Sbjct: 232 QAEVPPVARPPASAGQPANPPAQTQQPA------------AAPASGPNANPLDLFPQGLP 279
Query: 264 NASANAGGGNLDVLRNNSQFRGLLSLVQANPQILQPLLQELGKQNPQILQLIQENQAEFL 323
N N G G LD LRN+ QF+ L ++VQANPQ+LQP+LQELGKQNP +++LIQ++QA+FL
Sbjct: 280 NVGGNPGAGTLDFLRNSQQFQALRAMVQANPQVLQPMLQELGKQNPNLMRLIQDHQADFL 339
Query: 324 RLINEPAEGA--EGNLLDQFAAGM--PQTVAVTPEENEAIQRLEQMGFDRDLVLEVFFAC 379
RLINEP EG GNLL Q AAGM PQ + VT EE EAI+RLE MGF+R LVLEVFFAC
Sbjct: 340 RLINEPVEGGGESGNLLGQMAAGMPQPQAIQVTHEEREAIERLEAMGFERALVLEVFFAC 399
Query: 380 NKDELLAANYLLDHMNEFDD 399
NK+E LAANYLLDHM+EF++
Sbjct: 400 NKNEELAANYLLDHMHEFEE 419
Score = 105 bits (262), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 49/74 (66%), Positives = 61/74 (82%)
Query: 1 MKVSIKTLKGSSFEIDVEPTSKVSDVKKLIEVTQGDNVYPADQQMLIHQGNVLKNDTTLE 60
MK+ +KTLKG+ FEI+V+P V DVKK IE QG +VYPA +QMLIHQG VLK++TT+E
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIE 60
Query: 61 ENKVVENNFIVIML 74
ENKV EN+FIVIM+
Sbjct: 61 ENKVAENSFIVIMM 74
>AT1G79650.4 | chr1:29972406-29975132 REVERSE LENGTH=396
Length = 395
Score = 265 bits (678), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 137/258 (53%), Positives = 173/258 (67%), Gaps = 21/258 (8%)
Query: 144 DNYGQAASNLVAGSNLEGTVQSILEMGGGAWDRDTVMRALRAAYNNPERAVEYLYTGXXX 203
D YGQAAS LV+GS+LE VQ I+EMGGG+WD++TV RALRAAYNNPERAV+YLY+G
Sbjct: 157 DTYGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQ 216
Query: 204 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSIPSSGPNANPLDLFPQVLP 263
++ S GPN++PLDLFPQ
Sbjct: 217 TAEVAVPVPEAQIAGSGAAP-------------------VAPASGGPNSSPLDLFPQETV 257
Query: 264 NASANAGGGNLDVLRNNSQFRGLLSLVQANPQILQPLLQELGKQNPQILQLIQENQAEFL 323
A+ + G L+ LRNN QF+ L ++V +NPQILQP+LQELGKQNPQ+L+LIQENQAEFL
Sbjct: 258 AAAGSGDLGTLEFLRNNDQFQQLRTMVHSNPQILQPMLQELGKQNPQLLRLIQENQAEFL 317
Query: 324 RLINEPAEGA--EGNLLDQFAAGMPQTVAVTPEENEAIQRLEQMGFDRDLVLEVFFACNK 381
+L+NEP EG+ EG++ DQ MP + VTP E EAIQRLE MGFDR LV+E F AC++
Sbjct: 318 QLVNEPYEGSDGEGDMFDQPEQEMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDR 377
Query: 382 DELLAANYLLDHMNEFDD 399
+E LAANYLL++ +F+D
Sbjct: 378 NEELAANYLLENSGDFED 395
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 55/74 (74%)
Query: 1 MKVSIKTLKGSSFEIDVEPTSKVSDVKKLIEVTQGDNVYPADQQMLIHQGNVLKNDTTLE 60
MK+++KTLKGS FEI V P+ + VKK IE +QG + YP QQ+LIH G VLK++T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 ENKVVENNFIVIML 74
ENKV E F+V+ML
Sbjct: 61 ENKVTEEGFLVVML 74
>AT1G16190.1 | chr1:5543267-5545892 FORWARD LENGTH=369
Length = 368
Score = 263 bits (673), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 135/258 (52%), Positives = 173/258 (67%), Gaps = 22/258 (8%)
Query: 144 DNYGQAASNLVAGSNLEGTVQSILEMGGGAWDRDTVMRALRAAYNNPERAVEYLYTGXXX 203
D YGQAAS LV+GS++E VQ I+EMGGG+WD++TV RALRAAYNNPERAV+YLY+G
Sbjct: 131 DTYGQAASTLVSGSSIEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPE 190
Query: 204 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSIPSSGPNANPLDLFPQVLP 263
PS GPN++PLDLFPQ
Sbjct: 191 TVTIPATNLSGVGSGRELTAPP--------------------PSGGPNSSPLDLFPQEAV 230
Query: 264 NASANAGGGNLDVLRNNSQFRGLLSLVQANPQILQPLLQELGKQNPQILQLIQENQAEFL 323
+ +A G L+ LR N QF+ L S+V +NPQILQP+LQELGKQNPQ+L+LIQENQAEFL
Sbjct: 231 SDAAGGDLGTLEFLRGNDQFQQLRSMVNSNPQILQPMLQELGKQNPQLLRLIQENQAEFL 290
Query: 324 RLINEPAEGAEG--NLLDQFAAGMPQTVAVTPEENEAIQRLEQMGFDRDLVLEVFFACNK 381
+L+NEP EG++G ++ DQ MP +V VTPEE E+I+RLE MGFDR +V+E F +C++
Sbjct: 291 QLLNEPYEGSDGDVDIFDQPDQEMPHSVNVTPEEQESIERLEAMGFDRAIVIEAFLSCDR 350
Query: 382 DELLAANYLLDHMNEFDD 399
+E LAANYLL+H +F+D
Sbjct: 351 NEELAANYLLEHSADFED 368
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 43/74 (58%), Positives = 54/74 (72%)
Query: 1 MKVSIKTLKGSSFEIDVEPTSKVSDVKKLIEVTQGDNVYPADQQMLIHQGNVLKNDTTLE 60
MK+++KTLKGS FEI V PT + VKK IE +Q + YP QQ+LIH G VLK++TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVVENNFIVIML 74
ENKV E F+V+ML
Sbjct: 61 ENKVTEEGFLVVML 74
>AT5G16090.1 | chr5:5255797-5257230 REVERSE LENGTH=172
Length = 171
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/100 (47%), Positives = 68/100 (68%), Gaps = 2/100 (2%)
Query: 296 ILQPLLQELGKQNPQILQLIQENQAEFLRLINEPAEGAEGNLLDQFAAGMPQTVAVTPEE 355
I + L+E+ KQNP + Q+I+ N A F+ ++N+ + N L Q + Q + VT +
Sbjct: 74 ITKGCLEEMEKQNPPLFQMIRHNSAGFVPVLNKES-FERDNELAQPEEDLLQ-LQVTAVD 131
Query: 356 NEAIQRLEQMGFDRDLVLEVFFACNKDELLAANYLLDHMN 395
+EAI RLE MGF+R +VLEVF ACNK+E LAAN+LLDH++
Sbjct: 132 DEAINRLEAMGFERRVVLEVFLACNKNEQLAANFLLDHIH 171
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 53/74 (71%)
Query: 1 MKVSIKTLKGSSFEIDVEPTSKVSDVKKLIEVTQGDNVYPADQQMLIHQGNVLKNDTTLE 60
MK+ +KTLKG FEI+V+P V++VKK IE G + YPA QQ+LIH+ L+++TT+E
Sbjct: 1 MKIIVKTLKGIRFEIEVKPNDSVAEVKKNIETVMGASEYPAAQQILIHKREKLRDETTME 60
Query: 61 ENKVVENNFIVIML 74
NKV + + I I++
Sbjct: 61 ANKVFDKSVIAIII 74
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.313 0.132 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,685,901
Number of extensions: 235857
Number of successful extensions: 596
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 609
Number of HSP's successfully gapped: 14
Length of query: 406
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 305
Effective length of database: 8,337,553
Effective search space: 2542953665
Effective search space used: 2542953665
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 113 (48.1 bits)