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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0264300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to RAD23, isoform I.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.9 (0.0191) R2 : 0.396
β1 : -0.817 (0.0701) R2dD : 0.187 R2D : 0.14
β2 : 0.593 (0.0499) R2dC : 0.188 R2C : 0.186
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.233 (0.0408) R2dN8 : 0.0576 R2N8 : 0.014
σ : 0.36
deviance : 58.99
__
_____
C
peak time of C : 17.5
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
52.17 0.339 11.9 -0.67 0.589 0.256 0.672 -1.34 -0.14 17.8 19.43 1351 -- --
56.29 0.349 11.9 -0.7 0.602 0.235 0.555 -- -0.147 17.7 14.55 1390 -- --
53.1 0.339 11.9 -0.666 0.596 0.247 -- -1.3 -0.141 17.8 19.42 1281 -- --
57.19 0.352 11.9 -0.755 0.593 0.242 -- -- -0.161 17.6 14.55 1394 -- --
71.71 0.394 11.8 -0.661 -- 0.238 -- -1.4 -0.153 -- 25.97 1332 -- --
57.94 0.357 11.9 -0.814 0.589 -- 0.667 -- -0.236 17.6 -- -- -- --
58.99 0.36 11.9 -0.817 0.593 -- -- -- -0.233 17.5 -- -- -- --
75.06 0.404 11.8 -0.791 -- 0.244 -- -- -0.156 -- 14.6 1398 -- --
72.18 0.396 11.9 -- 0.587 0.258 -- -- -0.108 17.7 11.15 1451 -- --
77.3 0.411 11.9 -0.836 -- -- -- -- -0.247 -- -- -- -- --
76.56 0.409 11.9 -- 0.607 -- -- -- -0.142 17.4 -- -- -- --
90.36 0.443 11.8 -- -- 0.28 -- -- -0.0919 -- 10.25 1417 -- --
95.74 0.457 11.8 -- -- -- -- -- -0.154 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 48.89 temperature 20 720 > th dose dependent rect. 1 8
4 49.11 temperature 20 720 > th dose independent rect. 1 6
8 49.29 temperature 20 720 > th dose dependent rect. 6 1
13 49.39 temperature 20 720 > th dose dependent rect. 4 3
26 49.76 atmosphere 1005 270 > th dose independent rect. 16 11
60 50.33 atmosphere 1005 270 > th dose independent rect. 16 18
85 50.56 atmosphere 1005 30 > th dose dependent rect. 18 5
86 50.57 temperature 30 270 < th dose independent rect. 13 23
108 50.76 wind 7 4320 > th dose independent rect. 15 1
112 50.78 temperature 20 720 > th dose dependent sin 7 NA
122 50.84 wind 7 4320 < th dose independent rect. 15 1
133 50.98 atmosphere 1005 270 > th dose independent sin 15 NA
136 51.01 temperature 25 30 > th dose independent rect. 18 10
143 51.04 wind 7 4320 > th dose dependent rect. 15 1
148 51.08 temperature 25 30 > th dose independent rect. 18 8
153 51.09 temperature 20 720 > th dose independent sin 8 NA
185 51.29 temperature 20 270 > th dose dependent rect. 1 16
218 51.40 radiation 1 1440 > th dose dependent rect. 11 1
226 51.42 temperature 25 30 > th dose dependent rect. 18 10
231 51.43 temperature 25 90 > th dose dependent rect. 18 12
233 51.44 atmosphere 1005 30 < th dose independent rect. 13 19
253 51.50 temperature 15 30 > th dose dependent rect. 12 8
276 51.56 radiation 20 720 > th dose independent rect. 16 15
278 51.57 atmosphere 1005 270 < th dose independent rect. 15 15
287 51.61 temperature 20 720 > th dose independent rect. 23 16
294 51.63 temperature 20 720 > th dose independent rect. 21 16
296 51.63 radiation 40 1440 < th dose dependent rect. 11 1
330 51.70 radiation 20 720 > th dose independent rect. 16 1
347 51.71 atmosphere 1005 30 > th dose independent rect. 18 18
378 51.78 radiation 30 1440 < th dose independent rect. 15 21
388 51.79 temperature 25 270 > th dose dependent rect. 6 12
410 51.82 radiation 10 1440 > th dose dependent rect. 15 21
417 51.84 temperature 25 90 > th dose dependent rect. 20 10
421 51.85 temperature 25 270 > th dose dependent sin 1 NA
423 51.86 temperature 25 30 > th dose independent rect. 20 5
424 51.86 temperature 25 30 > th dose independent rect. 20 8
425 51.86 radiation 20 720 > th dose independent rect. 15 17
426 51.86 humidity 50 270 > th dose independent rect. 13 23
429 51.86 temperature 25 90 > th dose dependent rect. 20 7
465 51.92 atmosphere 1005 270 > th dose dependent rect. 18 1
516 52.02 temperature 20 720 > th dose dependent rect. 8 1
557 52.09 radiation 10 1440 > th dose dependent rect. 8 4
584 52.13 radiation 20 1440 < th dose independent rect. 11 1
603 52.16 radiation 30 1440 < th dose independent rect. 15 19
612 52.17 radiation 40 1440 < th dose independent rect. 11 1
617 52.18 atmosphere 1005 270 < th dose independent sin 14 NA
623 52.19 radiation 30 720 < th dose independent sin 12 NA
670 52.22 humidity 90 4320 > th dose dependent rect. 6 1
674 52.23 atmosphere 1005 10 > th dose independent rect. 20 10
707 52.27 radiation 30 1440 > th dose independent rect. 11 1
710 52.27 radiation 20 1440 > th dose independent rect. 15 19
719 52.28 radiation 40 1440 > th dose dependent sin 11 NA
737 52.30 atmosphere 995 30 > th dose dependent rect. 18 18
765 52.34 radiation 20 1440 > th dose independent rect. 15 21
772 52.35 atmosphere 1005 270 > th dose dependent rect. 17 3
825 52.40 atmosphere 1010 10 < th dose dependent rect. 12 21
827 52.40 temperature 25 10 > th dose dependent rect. 12 23
828 52.41 temperature 10 43200 > th dose independent rect. 13 7
833 52.41 temperature 20 30 > th dose dependent rect. 12 6
835 52.42 radiation 30 1440 < th dose independent rect. 6 6
855 52.44 radiation 30 1440 < th dose independent rect. 20 16
859 52.44 radiation 20 720 > th dose dependent sin 12 NA
886 52.46 temperature 25 10 > th dose dependent rect. 12 21
891 52.47 temperature 15 30 > th dose dependent rect. 12 10
894 52.48 radiation 1 14400 > th dose independent rect. 18 11
901 52.48 radiation 10 720 > th dose dependent rect. 15 17
903 52.49 radiation 30 1440 < th dose independent rect. 9 1
926 52.51 radiation 10 1440 > th dose dependent rect. 9 1
933 52.51 radiation 40 1440 < th dose dependent rect. 15 21
936 52.52 temperature 20 1440 < th dose independent rect. 3 1
957 52.53 temperature 20 1440 < th dose independent rect. 1 3
965 52.53 temperature 25 10 > th dose dependent rect. 12 10
997 52.55 radiation 40 720 > th dose independent rect. 14 19