BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0264300 Os06g0264300|AK073271
(413 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0264300 Similar to RAD23, isoform I 561 e-160
Os09g0407200 Similar to RAD23, isoform I 367 e-102
Os08g0430200 UV excision repair protein Rad23 family protein 283 2e-76
Os02g0179300 Similar to RAD23 protein, isoform II 225 4e-59
Os02g0465112 Similar to RAD23 protein, isoform II 96 6e-20
>Os06g0264300 Similar to RAD23, isoform I
Length = 413
Score = 561 bits (1445), Expect = e-160, Method: Compositional matrix adjust.
Identities = 300/413 (72%), Positives = 300/413 (72%)
Query: 1 MKLFVKTLKGTNFEIEASPEASVAEVKRIIESTQGQNVYPADQQMLIHQGKILKDDTTLE 60
MKLFVKTLKGTNFEIEASPEASVAEVKRIIESTQGQNVYPADQQMLIHQGKILKDDTTLE
Sbjct: 1 MKLFVKTLKGTNFEIEASPEASVAEVKRIIESTQGQNVYPADQQMLIHQGKILKDDTTLE 60
Query: 61 GNKVAENSFLVIMLXXXXXXXXXXXXXXXXPVSQSQPATPVASVARXXXXXXXXXXXXXX 120
GNKVAENSFLVIML PVSQSQPATPVASVAR
Sbjct: 61 GNKVAENSFLVIMLSKAKASSSGASTASKAPVSQSQPATPVASVARTPPPQAPVVTPEPA 120
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSQAASNLVSGSNLEQTIQQILDMGGGTW 180
YSQAASNLVSGSNLEQTIQQILDMGGGTW
Sbjct: 121 PPSAQPPVASATPAAAATPAAAVTASSDADVYSQAASNLVSGSNLEQTIQQILDMGGGTW 180
Query: 181 ERDMVVRALRAAYNNPERAIDYLYSGIPENXXXXXXXXXXXXXXXXGNXXXXXXXXXXXX 240
ERDMVVRALRAAYNNPERAIDYLYSGIPEN GN
Sbjct: 181 ERDMVVRALRAAYNNPERAIDYLYSGIPENVEPPQPVARAPAAVQQGNPQVPSQAQAAPP 240
Query: 241 XXXXXXXXXXXXNANPLNLFPQGIPSAGSNPXXXXXXXXXXXXLDALRQLPQFQALLALV 300
NANPLNLFPQGIPSAGSNP LDALRQLPQFQALLALV
Sbjct: 241 PPVQPAGGASGPNANPLNLFPQGIPSAGSNPGAAAGAGAGAGALDALRQLPQFQALLALV 300
Query: 301 QANPQILQPMLQELGKQNPQILRLIQENQAEFLRLVNESPDSGAAGGNILGQLAAAMPQA 360
QANPQILQPMLQELGKQNPQILRLIQENQAEFLRLVNESPDSGAAGGNILGQLAAAMPQA
Sbjct: 301 QANPQILQPMLQELGKQNPQILRLIQENQAEFLRLVNESPDSGAAGGNILGQLAAAMPQA 360
Query: 361 LTVTPEEREAIQRLEAMGFNRELVLEVFFACNKDEELAANYLLDHGHEFEDQQ 413
LTVTPEEREAIQRLEAMGFNRELVLEVFFACNKDEELAANYLLDHGHEFEDQQ
Sbjct: 361 LTVTPEEREAIQRLEAMGFNRELVLEVFFACNKDEELAANYLLDHGHEFEDQQ 413
>Os09g0407200 Similar to RAD23, isoform I
Length = 392
Score = 367 bits (943), Expect = e-102, Method: Compositional matrix adjust.
Identities = 204/412 (49%), Positives = 245/412 (59%), Gaps = 23/412 (5%)
Query: 1 MKLFVKTLKGTNFEIEASPEASVAEVKRIIESTQGQNVYPADQQMLIHQGKILKDDTTLE 60
MK+ VKTLKG+ F+IE VA+VKRIIE+TQGQ++YPA+QQMLIHQGK+LKDDTTL+
Sbjct: 1 MKISVKTLKGSTFQIEVDSAQKVADVKRIIETTQGQHIYPAEQQMLIHQGKVLKDDTTLD 60
Query: 61 GNKVAENSFLVIMLXXXXXXXXXXXXXXXXPVSQSQPATPVASVARXXXXXXXXXXXXXX 120
NKV ENSFLVIML P +Q+ P V +
Sbjct: 61 ENKVLENSFLVIMLRQGKGSSSSAPATSKAPSNQAPPTQTVPAAP-------ASQAPVAP 113
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSQAASNLVSGSNLEQTIQQILDMGGGTW 180
Y QA SNLV+GSNLE TIQ IL+MGGG W
Sbjct: 114 ATTVPVTVSAPTPTATASPAPAVAVSSEADNYGQATSNLVAGSNLEATIQSILEMGGGIW 173
Query: 181 ERDMVVRALRAAYNNPERAIDYLYSGIPENXXXXXXXXXXXXXXXXGNXXXXXXXXXXXX 240
+RD+V+ AL AA+NNPERA++YLYSG+PE
Sbjct: 174 DRDIVLHALSAAFNNPERAVEYLYSGVPEQMDIPVPPPSIQPANPT--------QASQAT 225
Query: 241 XXXXXXXXXXXXNANPLNLFPQGIPSAGSNPXXXXXXXXXXXXLDALRQLPQFQALLALV 300
NA+PL+LFPQ +P+A ++ LDALR QF+ LL+LV
Sbjct: 226 QPAAPSILSSGPNASPLDLFPQALPNASTD-------AAGLGNLDALRNNAQFRTLLSLV 278
Query: 301 QANPQILQPMLQELGKQNPQILRLIQENQAEFLRLVNESPDSGAAGGNILGQLAAAMPQA 360
QANPQILQP+LQELGKQNPQIL+LIQENQAEFL L+NE P G N+L Q AMPQ
Sbjct: 279 QANPQILQPLLQELGKQNPQILQLIQENQAEFLHLINE-PAEGDDEENLLDQFPEAMPQT 337
Query: 361 LTVTPEEREAIQRLEAMGFNRELVLEVFFACNKDEELAANYLLDHGHEFEDQ 412
+ VTPEE EAI RLEAMGF+R LVL+VFFACNKDE+LAANYLLDH +EF+D+
Sbjct: 338 IAVTPEENEAILRLEAMGFDRALVLDVFFACNKDEQLAANYLLDHMNEFDDE 389
>Os08g0430200 UV excision repair protein Rad23 family protein
Length = 406
Score = 283 bits (724), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 154/264 (58%), Positives = 178/264 (67%), Gaps = 14/264 (5%)
Query: 152 YSQAASNLVSGSNLEQTIQQILDMGGGTWERDMVVRALRAAYNNPERAIDYLYSGIPENX 211
Y QAASNLV+GSNLE T+Q IL+MGGG W+RD V+RALRAAYNNPERA++YLY+G+PE
Sbjct: 146 YGQAASNLVAGSNLEGTVQSILEMGGGAWDRDTVMRALRAAYNNPERAVEYLYTGVPEQA 205
Query: 212 XXXXXXXXXXXXXXXGN----XXXXXXXXXXXXXXXXXXXXXXXXNANPLNLFPQGIPSA 267
NANPL+LFPQ +P+A
Sbjct: 206 EAPAAVQALPVPAAVQALPVPAAVQPVDPSQAPQSAQLSIPSSGPNANPLDLFPQVLPNA 265
Query: 268 GSNPXXXXXXXXXXXXLDALRQLPQFQALLALVQANPQILQPMLQELGKQNPQILRLIQE 327
+N LD LR QF+ LL+LVQANPQILQP+LQELGKQNPQIL+LIQE
Sbjct: 266 SAN--------AGGGNLDVLRNNSQFRGLLSLVQANPQILQPLLQELGKQNPQILQLIQE 317
Query: 328 NQAEFLRLVNESPDSGAAGGNILGQLAAAMPQALTVTPEEREAIQRLEAMGFNRELVLEV 387
NQAEFLRL+NE P GA G N+L Q AA MPQ + VTPEE EAIQRLE MGF+R+LVLEV
Sbjct: 318 NQAEFLRLINE-PAEGAEG-NLLDQFAAGMPQTVAVTPEENEAIQRLEQMGFDRDLVLEV 375
Query: 388 FFACNKDEELAANYLLDHGHEFED 411
FFACNKDE LAANYLLDH +EF+D
Sbjct: 376 FFACNKDELLAANYLLDHMNEFDD 399
Score = 112 bits (280), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 50/74 (67%), Positives = 64/74 (86%)
Query: 1 MKLFVKTLKGTNFEIEASPEASVAEVKRIIESTQGQNVYPADQQMLIHQGKILKDDTTLE 60
MK+ +KTLKG++FEI+ P + V++VK++IE TQG NVYPADQQMLIHQG +LK+DTTLE
Sbjct: 1 MKVSIKTLKGSSFEIDVEPTSKVSDVKKLIEVTQGDNVYPADQQMLIHQGNVLKNDTTLE 60
Query: 61 GNKVAENSFLVIML 74
NKV EN+F+VIML
Sbjct: 61 ENKVVENNFIVIML 74
>Os02g0179300 Similar to RAD23 protein, isoform II
Length = 369
Score = 225 bits (574), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 127/255 (49%), Positives = 154/255 (60%), Gaps = 22/255 (8%)
Query: 152 YSQAASNLVSGSNLEQTIQQILDMGGGTWERDMVVRALRAAYNNPERAIDYLYSGIPENX 211
Y QAASNL+SGSNL+ TI Q+++MGGG+W+RD V RALRAAYNNPERA++YLYSGIP
Sbjct: 133 YGQAASNLLSGSNLDTTINQLMEMGGGSWDRDKVQRALRAAYNNPERAVEYLYSGIP--- 189
Query: 212 XXXXXXXXXXXXXXXGNXXXXXXXXXXXXXXXXXXXXXXXXNANPLNLFPQGIPSAGSNP 271
NA+PLNLFPQG
Sbjct: 190 ----------ITAEVAVPAGGQGANTTEPSSTREASLSGIPNASPLNLFPQG-------- 231
Query: 272 XXXXXXXXXXXXLDALRQLPQFQALLALVQANPQILQPMLQELGKQNPQILRLIQENQAE 331
L+ LR QFQAL +V NPQILQPMLQEL K+NPQ+LRLIQEN E
Sbjct: 232 DANDGGGAGGGTLEFLRHNQQFQALREMVHTNPQILQPMLQELSKKNPQLLRLIQENHDE 291
Query: 332 FLRLVNESPDSGAAGGNILGQLAAAMPQALTVTPEEREAIQRLEAMGFNRELVLEVFFAC 391
FL+L+NE P GA G + MP ++ VTPEE+EAI RLE MGF+R V+E FFAC
Sbjct: 292 FLQLINE-PFDGADGDFLDQPDQDEMPHSINVTPEEQEAIGRLEGMGFDRARVIEAFFAC 350
Query: 392 NKDEELAANYLLDHG 406
+++E+LAANYLL+H
Sbjct: 351 DRNEQLAANYLLEHA 365
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 45/74 (60%), Positives = 56/74 (75%)
Query: 1 MKLFVKTLKGTNFEIEASPEASVAEVKRIIESTQGQNVYPADQQMLIHQGKILKDDTTLE 60
MKL VKTLKGT FEI P ++ VK+IIE QG++ YP QQ+LIH GK+LKD++TLE
Sbjct: 1 MKLTVKTLKGTQFEIRVQPNDTIMAVKKIIEEIQGKDSYPWGQQLLIHNGKVLKDESTLE 60
Query: 61 GNKVAENSFLVIML 74
NKV+E FLV+ML
Sbjct: 61 ENKVSEVGFLVVML 74
>Os02g0465112 Similar to RAD23 protein, isoform II
Length = 92
Score = 95.5 bits (236), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 41/57 (71%), Positives = 50/57 (87%)
Query: 152 YSQAASNLVSGSNLEQTIQQILDMGGGTWERDMVVRALRAAYNNPERAIDYLYSGIP 208
Y AASNLV+GSNLE T+Q IL+MGGG W+RD V+RAL AAYNNPERA++YLY+G+P
Sbjct: 11 YGLAASNLVAGSNLEGTVQSILEMGGGAWDRDTVMRALGAAYNNPERAVEYLYTGLP 67
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.131 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,424,666
Number of extensions: 294008
Number of successful extensions: 648
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 642
Number of HSP's successfully gapped: 12
Length of query: 413
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 310
Effective length of database: 11,657,759
Effective search space: 3613905290
Effective search space used: 3613905290
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 157 (65.1 bits)