BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0366200 Os08g0366200|AK103736
(144 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0366200 Protein of unknown function DUF1313 family pro... 141 2e-34
Os08g0366300 102 1e-22
Os11g0621500 Similar to EARLY FLOWERING 4 (Fragment) 84 4e-17
Os03g0410300 Protein of unknown function DUF1313 family pro... 78 2e-15
>Os08g0366200 Protein of unknown function DUF1313 family protein
Length = 144
Score = 141 bits (355), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 77/105 (73%), Positives = 77/105 (73%)
Query: 1 MEEDSVISNGGREEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQRNFGEVQGILEQNRV 60
MEEDSVISNGGREEE LQRNFGEVQGILEQNRV
Sbjct: 1 MEEDSVISNGGREEEVVVANGSGGGVGGTARSSGGGGGKVVQVLQRNFGEVQGILEQNRV 60
Query: 61 LIQEISQNHEARDADGLTRNVALIRELNTNIARVVDLYANLSGSF 105
LIQEISQNHEARDADGLTRNVALIRELNTNIARVVDLYANLSGSF
Sbjct: 61 LIQEISQNHEARDADGLTRNVALIRELNTNIARVVDLYANLSGSF 105
>Os08g0366300
Length = 176
Score = 102 bits (253), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/58 (84%), Positives = 54/58 (93%)
Query: 47 NFGEVQGILEQNRVLIQEISQNHEARDADGLTRNVALIRELNTNIARVVDLYANLSGS 104
+ GEV+GILEQN LIQEISQNH+ARDAD LTRNVALIR+LNTNIARVVDLYANL+GS
Sbjct: 75 SLGEVRGILEQNHTLIQEISQNHKARDADRLTRNVALIRDLNTNIARVVDLYANLTGS 132
>Os11g0621500 Similar to EARLY FLOWERING 4 (Fragment)
Length = 117
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/62 (66%), Positives = 49/62 (79%)
Query: 44 LQRNFGEVQGILEQNRVLIQEISQNHEARDADGLTRNVALIRELNTNIARVVDLYANLSG 103
++F +VQ IL+QNR+LI EI+QNHE+R D LTRNV LIRELN NI RVV LYA+LS
Sbjct: 23 FHKSFVQVQSILDQNRMLINEINQNHESRAPDNLTRNVGLIRELNNNIRRVVGLYADLSA 82
Query: 104 SF 105
SF
Sbjct: 83 SF 84
>Os03g0410300 Protein of unknown function DUF1313 family protein
Length = 114
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/62 (62%), Positives = 48/62 (77%)
Query: 44 LQRNFGEVQGILEQNRVLIQEISQNHEARDADGLTRNVALIRELNTNIARVVDLYANLSG 103
Q +F +VQ +L+QNRVLI EI+QNHE++ L+RNV LIRELN NI RVVDLYA+LS
Sbjct: 20 FQTSFVQVQSLLDQNRVLINEINQNHESKVPGDLSRNVGLIRELNNNIRRVVDLYADLSS 79
Query: 104 SF 105
F
Sbjct: 80 LF 81
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.311 0.132 0.343
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,306,937
Number of extensions: 51664
Number of successful extensions: 72
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 4
Length of query: 144
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 53
Effective length of database: 12,284,327
Effective search space: 651069331
Effective search space used: 651069331
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 151 (62.8 bits)