BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0321600 Os08g0321600|AK060871
(125 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0321600 Conserved hypothetical protein 219 3e-58
Os12g0428300 Retrotransposon gag protein family protein 108 1e-24
Os12g0264400 97 2e-21
Os06g0570000 77 4e-15
Os03g0827200 74 2e-14
Os10g0127200 72 9e-14
Os07g0195900 63 7e-11
Os09g0387900 62 8e-11
>Os08g0321600 Conserved hypothetical protein
Length = 125
Score = 219 bits (559), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 108/108 (100%), Positives = 108/108 (100%)
Query: 1 MVAAMEVMEARVMEVLTKLAGKVEGMDVITNHLGEIDAKLVTQGERLDRVQAKMDLSITL 60
MVAAMEVMEARVMEVLTKLAGKVEGMDVITNHLGEIDAKLVTQGERLDRVQAKMDLSITL
Sbjct: 1 MVAAMEVMEARVMEVLTKLAGKVEGMDVITNHLGEIDAKLVTQGERLDRVQAKMDLSITL 60
Query: 61 LGQVQQEQSRPEGGSGCSRAGGAINSIASPAAVAGDSARGICGVYFDG 108
LGQVQQEQSRPEGGSGCSRAGGAINSIASPAAVAGDSARGICGVYFDG
Sbjct: 61 LGQVQQEQSRPEGGSGCSRAGGAINSIASPAAVAGDSARGICGVYFDG 108
>Os12g0428300 Retrotransposon gag protein family protein
Length = 545
Score = 108 bits (269), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/66 (80%), Positives = 59/66 (89%)
Query: 5 MEVMEARVMEVLTKLAGKVEGMDVITNHLGEIDAKLVTQGERLDRVQAKMDLSITLLGQV 64
ME ME RVMEVLT+LAGKVE ++VIT HL EIDAKLV+ GERLDRVQAKMDLS+T LGQV
Sbjct: 1 MEAMEERVMEVLTRLAGKVENIEVITKHLEEIDAKLVSHGERLDRVQAKMDLSMTSLGQV 60
Query: 65 QQEQSR 70
QQEQS+
Sbjct: 61 QQEQSQ 66
>Os12g0264400
Length = 468
Score = 97.4 bits (241), Expect = 2e-21, Method: Composition-based stats.
Identities = 47/69 (68%), Positives = 58/69 (84%)
Query: 2 VAAMEVMEARVMEVLTKLAGKVEGMDVITNHLGEIDAKLVTQGERLDRVQAKMDLSITLL 61
+ ++ +E +M VLT+L KV+ +DVIT HLGEIDAKLVTQGERLDRVQAKMDLS+T L
Sbjct: 1 MVVVDSIEEWMMAVLTQLMAKVDNIDVITKHLGEIDAKLVTQGERLDRVQAKMDLSMTSL 60
Query: 62 GQVQQEQSR 70
GQVQQEQ++
Sbjct: 61 GQVQQEQTQ 69
>Os06g0570000
Length = 242
Score = 76.6 bits (187), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 49/66 (74%)
Query: 5 MEVMEARVMEVLTKLAGKVEGMDVITNHLGEIDAKLVTQGERLDRVQAKMDLSITLLGQV 64
ME ME R+M+ L LA KV+G++ I L +ID KL QGE LDRVQ K+DLS+T LGQV
Sbjct: 1 MESMEERLMDTLKALALKVDGVEDIAKRLTQIDLKLAQQGEWLDRVQTKVDLSMTSLGQV 60
Query: 65 QQEQSR 70
QQEQS+
Sbjct: 61 QQEQSQ 66
>Os03g0827200
Length = 437
Score = 74.3 bits (181), Expect = 2e-14, Method: Composition-based stats.
Identities = 40/65 (61%), Positives = 46/65 (70%)
Query: 5 MEVMEARVMEVLTKLAGKVEGMDVITNHLGEIDAKLVTQGERLDRVQAKMDLSITLLGQV 64
M ME RVMEVL +L KV ++ I L ID KL QGERLDRVQ K+DLS+T LGQV
Sbjct: 1 MASMEERVMEVLKELLVKVNTIEDIGKRLHLIDNKLAQQGERLDRVQTKVDLSMTSLGQV 60
Query: 65 QQEQS 69
QQEQ+
Sbjct: 61 QQEQT 65
>Os10g0127200
Length = 63
Score = 72.0 bits (175), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 45/63 (71%)
Query: 5 MEVMEARVMEVLTKLAGKVEGMDVITNHLGEIDAKLVTQGERLDRVQAKMDLSITLLGQV 64
ME ME R+M+ + +A KV+GMD I HL +ID KL Q E LDRVQ K+D S+T LGQV
Sbjct: 1 MESMEERLMDAMKAVAAKVDGMDGIAKHLAQIDLKLAQQDELLDRVQTKVDRSMTSLGQV 60
Query: 65 QQE 67
QQE
Sbjct: 61 QQE 63
>Os07g0195900
Length = 527
Score = 62.8 bits (151), Expect = 7e-11, Method: Composition-based stats.
Identities = 31/63 (49%), Positives = 44/63 (69%)
Query: 8 MEARVMEVLTKLAGKVEGMDVITNHLGEIDAKLVTQGERLDRVQAKMDLSITLLGQVQQE 67
ME + + + L KVE +D + L +ID KL TQG+RLD VQ+K+DLS++ LGQVQ E
Sbjct: 1 MEEHITQAIAVLVTKVERVDNLCKQLKQIDLKLETQGKRLDSVQSKVDLSMSSLGQVQHE 60
Query: 68 QSR 70
Q++
Sbjct: 61 QAQ 63
>Os09g0387900
Length = 268
Score = 62.4 bits (150), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 43/61 (70%)
Query: 8 MEARVMEVLTKLAGKVEGMDVITNHLGEIDAKLVTQGERLDRVQAKMDLSITLLGQVQQE 67
ME R++ + KLA KVE + +I L +D KL QGERLD+VQAK+DLS+ LGQV QE
Sbjct: 4 MEERLLAAVEKLAEKVEKVGLIQEKLEVMDKKLEKQGERLDQVQAKVDLSLESLGQVLQE 63
Query: 68 Q 68
Q
Sbjct: 64 Q 64
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.132 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,509,043
Number of extensions: 132397
Number of successful extensions: 694
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 694
Number of HSP's successfully gapped: 8
Length of query: 125
Length of database: 17,035,801
Length adjustment: 88
Effective length of query: 37
Effective length of database: 12,440,969
Effective search space: 460315853
Effective search space used: 460315853
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 149 (62.0 bits)