BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0299400 Os08g0299400|AK064148
(408 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0299400 Similar to MGDG synthase type A 816 0.0
Os02g0802700 Similar to MGDG synthase type A 456 e-128
Os09g0423600 Similar to Monogalactosyldiacylglycerol syntha... 287 9e-78
>Os08g0299400 Similar to MGDG synthase type A
Length = 408
Score = 816 bits (2108), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/408 (96%), Positives = 394/408 (96%)
Query: 1 CGRKTAAAKNVLILMSDTGGGHRASAEALRDAFRLEFGDAYQVFVRDLGKEYGGWPLNDM 60
CGRKTAAAKNVLILMSDTGGGHRASAEALRDAFRLEFGDAYQVFVRDLGKEYGGWPLNDM
Sbjct: 1 CGRKTAAAKNVLILMSDTGGGHRASAEALRDAFRLEFGDAYQVFVRDLGKEYGGWPLNDM 60
Query: 61 ERSYKFMIRHVRLWKVAFHGTSPRWVHGMYLAALAYFYANEVVAGIMRYNPDIIISVHPL 120
ERSYKFMIRHVRLWKVAFHGTSPRWVHGMYLAALAYFYANEVVAGIMRYNPDIIISVHPL
Sbjct: 61 ERSYKFMIRHVRLWKVAFHGTSPRWVHGMYLAALAYFYANEVVAGIMRYNPDIIISVHPL 120
Query: 121 MQHIPLWVLKWQSLHPKVPFVTVITDLNTCHPTWFHHGVTRCYCPSAEVAKRALLRGLEP 180
MQHIPLWVLKWQSLHPKVPFVTVITDLNTCHPTWFHHGVTRCYCPSAEVAKRALLRGLEP
Sbjct: 121 MQHIPLWVLKWQSLHPKVPFVTVITDLNTCHPTWFHHGVTRCYCPSAEVAKRALLRGLEP 180
Query: 181 SQIRVYGLPIRPSFCRAVLDKDELRKELDMDPDLPAXXXXXXXXXXXXXXETARALSDEL 240
SQIRVYGLPIRPSFCRAVLDKDELRKELDMDPDLPA ETARALSDEL
Sbjct: 181 SQIRVYGLPIRPSFCRAVLDKDELRKELDMDPDLPAVLLMGGGEGMGPVEETARALSDEL 240
Query: 241 YDRRRRRPVGQIVVICGRNQVLRSTLQSSRWNVPVKIRGFEKQMEKWMGACDCIITKAGP 300
YDRRRRRPVGQIVVICGRNQVLRSTLQSSRWNVPVKIRGFEKQMEKWMGACDCIITKAGP
Sbjct: 241 YDRRRRRPVGQIVVICGRNQVLRSTLQSSRWNVPVKIRGFEKQMEKWMGACDCIITKAGP 300
Query: 301 GTIAEALIRGLPIILNDFIPGQEVGNVPYVVDNGAGVFSKDPREAARQVARWFTTHTNEL 360
GTIAEALIRGLPIILNDFIPGQEVGNVPYVVDNGAGVFSKDPREAARQVARWFTTHTNEL
Sbjct: 301 GTIAEALIRGLPIILNDFIPGQEVGNVPYVVDNGAGVFSKDPREAARQVARWFTTHTNEL 360
Query: 361 RRYSLNALKLAQPEAVFDIVKDIHKLQQQPATVTRIPYSLTSSFSYSI 408
RRYSLNALKLAQPEAVFDIVKDIHKLQQQPATVTRIPYSLTSSFSYSI
Sbjct: 361 RRYSLNALKLAQPEAVFDIVKDIHKLQQQPATVTRIPYSLTSSFSYSI 408
>Os02g0802700 Similar to MGDG synthase type A
Length = 406
Score = 456 bits (1174), Expect = e-128, Method: Compositional matrix adjust.
Identities = 213/308 (69%), Positives = 249/308 (80%)
Query: 86 VHGMYLAALAYFYANEVVAGIMRYNPDIIISVHPLMQHIPLWVLKWQSLHPKVPFVTVIT 145
+ G +AALA FYA +V AG+ +Y PDIIISVHPLMQHIPLWVLKWQ L +V FVTVIT
Sbjct: 75 LRGGAVAALASFYAKKVEAGLKKYKPDIIISVHPLMQHIPLWVLKWQGLQNRVVFVTVIT 134
Query: 146 DLNTCHPTWFHHGVTRCYCPSAEVAKRALLRGLEPSQIRVYGLPIRPSFCRAVLDKDELR 205
DLNTCHPTWFH V RCYCPS EVAKRA L L+PSQIRV+GLPIRPSFCRAVL KD+LR
Sbjct: 135 DLNTCHPTWFHADVNRCYCPSEEVAKRAALDDLQPSQIRVFGLPIRPSFCRAVLVKDDLR 194
Query: 206 KELDMDPDLPAXXXXXXXXXXXXXXETARALSDELYDRRRRRPVGQIVVICGRNQVLRST 265
KEL++DP+LPA +TA+AL + L+D+ +P+GQ++VICGRN+ L S+
Sbjct: 195 KELELDPELPAVLLMGGGEGMGPVKKTAKALGESLFDKELGKPIGQLIVICGRNKTLSSS 254
Query: 266 LQSSRWNVPVKIRGFEKQMEKWMGACDCIITKAGPGTIAEALIRGLPIILNDFIPGQEVG 325
LQ+ W +P+K+RGFE QMEKWMGACDCIITKAGPGTIAEALIRGLPIILNDFIPGQEVG
Sbjct: 255 LQALEWKIPIKVRGFETQMEKWMGACDCIITKAGPGTIAEALIRGLPIILNDFIPGQEVG 314
Query: 326 NVPYVVDNGAGVFSKDPREAARQVARWFTTHTNELRRYSLNALKLAQPEAVFDIVKDIHK 385
NVPYVVDNGAGVFSK RE A+ VARWF ++EL+R S ALKLAQPEAVFDIV+DIH+
Sbjct: 315 NVPYVVDNGAGVFSKSSRETAKLVARWFGPDSDELKRMSEKALKLAQPEAVFDIVRDIHE 374
Query: 386 LQQQPATV 393
L ++ +
Sbjct: 375 LSREQGVI 382
>Os09g0423600 Similar to Monogalactosyldiacylglycerol synthase (EC 2.4.1.46)
Length = 239
Score = 287 bits (735), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 142/234 (60%), Positives = 170/234 (72%)
Query: 162 CYCPSAEVAKRALLRGLEPSQIRVYGLPIRPSFCRAVLDKDELRKELDMDPDLPAXXXXX 221
CYCPSAEV+KRAL GL+PSQI+VYGLP+RPSF + + +DELR+EL MD LPA
Sbjct: 1 CYCPSAEVSKRALKAGLQPSQIKVYGLPVRPSFVKPIRPEDELRRELGMDEYLPAVLLMG 60
Query: 222 XXXXXXXXXETARALSDELYDRRRRRPVGQIVVICGRNQVLRSTLQSSRWNVPVKIRGFE 281
TARAL D LYD P GQI+VICGRN+ L S LQS W VPV+++GF
Sbjct: 61 GGEGMGPIEATARALGDALYDEVLGEPTGQILVICGRNKKLTSRLQSINWKVPVQVKGFV 120
Query: 282 KQMEKWMGACDCIITKAGPGTIAEALIRGLPIILNDFIPGQEVGNVPYVVDNGAGVFSKD 341
+ME+ MGACDCIITKAGPGTIAEA+IRGLPIILN +I GQE GNVPYVVDNG G FSK
Sbjct: 121 TKMEECMGACDCIITKAGPGTIAEAMIRGLPIILNGYIAGQEAGNVPYVVDNGCGKFSKS 180
Query: 342 PREAARQVARWFTTHTNELRRYSLNALKLAQPEAVFDIVKDIHKLQQQPATVTR 395
P + A+ VA WF ++EL+ S NALKLA+P+AVF IV D+H+L +Q V +
Sbjct: 181 PEQIAKIVADWFGPRSDELKMMSQNALKLARPDAVFKIVHDLHELVRQKCFVPQ 234
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.139 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,912,832
Number of extensions: 571448
Number of successful extensions: 1672
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1671
Number of HSP's successfully gapped: 3
Length of query: 408
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 305
Effective length of database: 11,657,759
Effective search space: 3555616495
Effective search space used: 3555616495
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 157 (65.1 bits)