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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0299400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to MGDG synthase type A.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.5 (0.115) R2 : 0.833
β1 : -1.26 (0.536) R2dD : 0.00773 R2D : 0.0676
β2 : 1.61 (0.198) R2dC : 0.0239 R2C : -0.0217
β3 : 5.84 (0.283) R2dE : 0.336 R2E : 0.57
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -14.6 (1.29) R2dD*E : 0.187 R2D*E : 0.462
γ1 : 0.422 (0.264) R2dN8 : 0.00232 R2N8 : -0.0611
σ : 1.44
deviance : 958.17
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_____
C
peak time of C : 4.22
E
wheather : temperature
threshold : 25
memory length : 13201
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 8.22
open length of G : 3.1

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
954.07 1.45 5.5 -1.27 1.59 5.82 1.75 -14.6 0.411 4.21 24.9 13223 8.16 3.09
1095.63 1.54 6.33 -3.72 1.85 6.5 0.69 -- -1.24 5.12 23.58 24738 7.95 5.15
958.17 1.44 5.5 -1.26 1.61 5.84 -- -14.6 0.422 4.22 25 13201 8.22 3.1
1073.35 1.53 6.38 -3.34 1.47 6.77 -- -- -1.42 5.18 23.59 24680 8.47 5.75
1074.2 1.53 5.49 -1.14 -- 5.8 -- -14.5 0.261 -- 25.09 17492 8.38 3.09
2109.52 2.15 7.05 -10.3 1.41 -- 1.88 -- -4.25 4.9 -- -- -- --
2116.87 2.15 7.06 -10.3 1.44 -- -- -- -4.26 5.35 -- -- -- --
1149.34 1.58 6.37 -2.41 -- 7.93 -- -- -1.09 -- 23.57 24493 11.7 3.06
1113.1 1.55 6.2 -- 1.43 8.91 -- -- -0.424 5.66 22.7 25913 8.67 4.12
2225.72 2.2 7.07 -10.2 -- -- -- -- -4.22 -- -- -- -- --
4893.28 3.27 6.8 -- 1.28 -- -- -- -3.12 5.67 -- -- -- --
1198.21 1.61 6.23 -- -- 9.28 -- -- -0.392 -- 23.41 24595 11.6 2.5
4977.84 3.29 6.82 -- -- -- -- -- -3.09 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 980.30 temperature 25.0 14400 > th dose independent rect. 10 1
2 982.56 temperature 25.0 14400 < th dose independent rect. 10 1
9 1004.62 temperature 20.0 14400 < th dose independent rect. 5 1
12 1009.08 temperature 20.0 14400 > th dose independent rect. 5 2
14 1009.91 temperature 20.0 14400 < th dose independent rect. 4 3
25 1012.78 temperature 20.0 14400 > th dose dependent rect. 6 1
36 1014.24 temperature 20.0 14400 < th dose independent rect. 23 8
40 1015.10 temperature 20.0 14400 > th dose independent rect. 23 8
41 1015.21 temperature 20.0 14400 > th dose dependent rect. 5 3
99 1021.97 temperature 20.0 14400 < th dose independent rect. 23 1
111 1023.51 radiation 1.0 43200 < th dose dependent rect. 9 3
134 1026.32 radiation 1.0 43200 < th dose dependent rect. 7 5
144 1027.08 radiation 1.0 43200 < th dose independent rect. 10 2
149 1027.53 radiation 1.0 43200 > th dose independent rect. 10 2
158 1028.62 radiation 30.0 43200 < th dose independent rect. 16 15
179 1030.45 temperature 20.0 14400 > th dose dependent rect. 24 1
183 1030.97 radiation 1.0 43200 > th dose independent rect. 8 4
185 1031.13 radiation 1.0 43200 < th dose independent rect. 8 4
198 1032.97 radiation 10.0 43200 < th dose independent rect. 17 1
203 1033.12 temperature 20.0 14400 > th dose dependent rect. 23 4
208 1033.55 radiation 40.0 43200 < th dose independent rect. 15 17
226 1034.50 radiation 10.0 43200 < th dose independent rect. 17 11
227 1034.52 temperature 20.0 14400 > th dose dependent rect. 2 1
229 1034.57 radiation 10.0 43200 < th dose independent rect. 17 8
234 1034.73 radiation 10.0 43200 < th dose independent rect. 17 6
241 1034.97 radiation 10.0 43200 < th dose independent rect. 17 4
268 1037.06 radiation 30.0 43200 < th dose independent rect. 16 9
273 1037.38 radiation 30.0 43200 < th dose independent rect. 16 12
276 1037.41 temperature 20.0 43200 > th dose independent rect. 14 1
279 1037.63 radiation 30.0 43200 > th dose dependent rect. 16 16
291 1038.13 radiation 30.0 43200 < th dose independent rect. 16 1
300 1038.44 radiation 10.0 43200 < th dose independent rect. 17 14
312 1038.99 radiation 40.0 43200 < th dose independent rect. 15 4
322 1039.58 humidity 70.0 43200 < th dose independent rect. 7 1
343 1041.24 temperature 20.0 14400 > th dose dependent sin 8 NA
373 1044.38 temperature 20.0 43200 < th dose independent rect. 14 1
379 1044.79 precipitation 0.1 43200 > th dose dependent rect. 4 1
385 1045.20 radiation 30.0 43200 > th dose dependent rect. 7 1
411 1046.32 radiation 10.0 43200 < th dose independent rect. 5 1
432 1047.23 temperature 20.0 14400 < th dose dependent rect. 22 3
436 1047.31 radiation 40.0 43200 < th dose independent rect. 18 14
441 1047.37 radiation 40.0 43200 < th dose independent rect. 20 12
443 1047.58 radiation 40.0 43200 < th dose independent rect. 22 10
462 1049.40 radiation 40.0 43200 < th dose independent rect. 24 8
468 1049.72 radiation 40.0 43200 < th dose independent rect. 6 2
497 1050.75 temperature 20.0 14400 < th dose dependent rect. 23 1
499 1051.11 radiation 40.0 43200 < th dose independent rect. 3 5
513 1052.16 precipitation 0.1 43200 > th dose independent rect. 4 1
518 1052.51 radiation 10.0 43200 < th dose independent rect. 20 11
519 1052.53 radiation 10.0 43200 < th dose independent rect. 22 9
524 1052.67 radiation 10.0 43200 < th dose independent rect. 24 7
528 1052.77 radiation 10.0 43200 < th dose independent rect. 2 5
595 1057.57 temperature 20.0 14400 < th dose independent sin 10 NA
600 1057.84 temperature 25.0 14400 > th dose dependent rect. 13 2
607 1058.17 temperature 20.0 14400 > th dose independent sin 9 NA
640 1061.05 precipitation 0.1 43200 < th dose independent rect. 4 1
641 1061.05 precipitation 0.1 43200 < th dose dependent rect. 4 1
656 1062.37 humidity 70.0 43200 > th dose independent rect. 7 1
670 1063.74 wind 1.0 43200 < th dose dependent rect. 19 10
681 1064.82 temperature 25.0 14400 > th dose independent rect. 18 1
692 1065.61 temperature 25.0 14400 < th dose independent rect. 18 1
753 1069.47 temperature 25.0 14400 > th dose independent sin 3 NA
814 1071.44 precipitation 0.1 43200 > th dose independent rect. 8 2
815 1071.44 precipitation 0.1 43200 > th dose dependent rect. 8 2
824 1071.73 temperature 25.0 14400 < th dose independent sin 3 NA
850 1072.52 precipitation 0.1 43200 < th dose independent rect. 8 2
852 1072.52 precipitation 0.1 43200 < th dose dependent rect. 8 2
921 1074.77 radiation 1.0 43200 > th dose dependent rect. 18 12
957 1075.61 temperature 25.0 14400 > th dose independent rect. 6 13