BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0299400 Os08g0299400|AK064148
(408 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G11810.1 | chr2:4743388-4746633 FORWARD LENGTH=466 593 e-170
AT5G20410.1 | chr5:6896765-6898581 FORWARD LENGTH=469 585 e-167
AT4G31780.2 | chr4:15374222-15376961 FORWARD LENGTH=534 483 e-137
>AT2G11810.1 | chr2:4743388-4746633 FORWARD LENGTH=466
Length = 465
Score = 593 bits (1529), Expect = e-170, Method: Compositional matrix adjust.
Identities = 276/398 (69%), Positives = 324/398 (81%), Gaps = 5/398 (1%)
Query: 9 KNVLILMSDTGGGHRASAEALRDAFRLEFGDAYQVFVRDLGKEYGGWPLNDMERSYKFMI 68
K VLILMSDTGGGHRASAEA+RDAF++EFGD Y++ ++D+ KEY GWPLNDMER YKFM+
Sbjct: 73 KTVLILMSDTGGGHRASAEAIRDAFKIEFGDDYRIIIKDVWKEYTGWPLNDMERQYKFMV 132
Query: 69 RHVRLWKVAFHGTSPRWVHGMYLAALAYFYANEVVAGIMRYNPDIIISVHPLMQHIPLWV 128
+HV LW VAFHGTSP+W+H YL+ALA +YA E+ AG+M Y PDIIISVHPLMQHIPLWV
Sbjct: 133 KHVGLWSVAFHGTSPKWIHKSYLSALAAYYAKEIEAGLMEYKPDIIISVHPLMQHIPLWV 192
Query: 129 LKWQSLHPKVPFVTVITDLNTCHPTWFHHGVTRCYCPSAEVAKRALLRGLEPSQIRVYGL 188
+KWQ LH KV FVTVITDLNTCH TWFHHGV+RCYCPS EVAKRAL+ GL+ SQIRV+GL
Sbjct: 193 MKWQGLHKKVIFVTVITDLNTCHRTWFHHGVSRCYCPSKEVAKRALVDGLDDSQIRVFGL 252
Query: 189 PIRPSFCRAVLDKDELRKELDMDPDLPAXXXXXXXXXXXXXXETARALSDELYDRRRRRP 248
P+RPSF R +L+K+ELRKEL++D +LPA +TA AL D LY+ + P
Sbjct: 253 PVRPSFPRTILNKNELRKELEIDLNLPAVLLMGGGEGMGPVQKTALALGDSLYNSKESNP 312
Query: 249 VGQIVVICGRNQVLRSTLQSSRWNVPVKIRGFEKQMEKWMGACDCIITKAGPGTIAEALI 308
+GQ++VICGRN+VL STL S W +PVK+RGFE QMEKWMGACDCIITKAGPGTIAEALI
Sbjct: 313 IGQLIVICGRNKVLASTLASHEWKIPVKVRGFETQMEKWMGACDCIITKAGPGTIAEALI 372
Query: 309 RGLPIILNDFIPGQEVGNVPYVVDNGAGVFSKDPREAARQVARWFTTHTNELRRYSLNAL 368
GLPIILND+IPGQE GNVPYVVDNGAGVF++ P+E A+ VA WF+ + EL++ S NAL
Sbjct: 373 CGLPIILNDYIPGQEKGNVPYVVDNGAGVFTRSPKETAKIVADWFSNNKEELKKMSENAL 432
Query: 369 KLAQPEAVFDIVKDIHKLQQQPATVTRIPYSLTSSFSY 406
KL+QPEAVFDIVKDIH L QQ RIP L + FSY
Sbjct: 433 KLSQPEAVFDIVKDIHHLSQQQ---QRIP--LFNEFSY 465
>AT5G20410.1 | chr5:6896765-6898581 FORWARD LENGTH=469
Length = 468
Score = 585 bits (1509), Expect = e-167, Method: Compositional matrix adjust.
Identities = 278/398 (69%), Positives = 326/398 (81%)
Query: 8 AKNVLILMSDTGGGHRASAEALRDAFRLEFGDAYQVFVRDLGKEYGGWPLNDMERSYKFM 67
KNVLILMSDTGGGHRASAEA+RDAF++EFGD Y+V V+D+ KEY GWPLNDMERSYKFM
Sbjct: 68 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDKYRVIVKDVWKEYTGWPLNDMERSYKFM 127
Query: 68 IRHVRLWKVAFHGTSPRWVHGMYLAALAYFYANEVVAGIMRYNPDIIISVHPLMQHIPLW 127
++HV+LWKVAFH TSP+W+H YLAA+A +YA EV AG+M Y P+IIISVHPLMQHIPLW
Sbjct: 128 VKHVQLWKVAFHSTSPKWIHSCYLAAIAAYYAKEVEAGLMEYKPEIIISVHPLMQHIPLW 187
Query: 128 VLKWQSLHPKVPFVTVITDLNTCHPTWFHHGVTRCYCPSAEVAKRALLRGLEPSQIRVYG 187
VLKWQ L +V FVTVITDLNTCHPTWFH GV RCYCPS EVAKRAL GL+ SQ+RV+G
Sbjct: 188 VLKWQELQKRVLFVTVITDLNTCHPTWFHPGVNRCYCPSQEVAKRALFDGLDESQVRVFG 247
Query: 188 LPIRPSFCRAVLDKDELRKELDMDPDLPAXXXXXXXXXXXXXXETARALSDELYDRRRRR 247
LP+RPSF RAVL KD+LRKEL+MD DL A ETA+AL + LYD+ R+
Sbjct: 248 LPVRPSFARAVLVKDDLRKELEMDQDLRAVLLMGGGEGMGPVKETAKALEEFLYDKENRK 307
Query: 248 PVGQIVVICGRNQVLRSTLQSSRWNVPVKIRGFEKQMEKWMGACDCIITKAGPGTIAEAL 307
P+GQ+VVICGRN+ L S L++ W +PVK+RGFE QMEKWMGACDCIITKAGPGTIAE+L
Sbjct: 308 PIGQMVVICGRNKKLASALEAIDWKIPVKVRGFETQMEKWMGACDCIITKAGPGTIAESL 367
Query: 308 IRGLPIILNDFIPGQEVGNVPYVVDNGAGVFSKDPREAARQVARWFTTHTNELRRYSLNA 367
IR LPIILND+IPGQE GNVPYVV+NGAGVF++ P+E AR V WF+T T+EL + S NA
Sbjct: 368 IRSLPIILNDYIPGQEKGNVPYVVENGAGVFTRSPKETARIVGEWFSTKTDELEQTSDNA 427
Query: 368 LKLAQPEAVFDIVKDIHKLQQQPATVTRIPYSLTSSFS 405
KLAQPEAVFDIVKDI +L +Q + + Y+LTSSF+
Sbjct: 428 RKLAQPEAVFDIVKDIDELSEQRGPLASVSYNLTSSFA 465
>AT4G31780.2 | chr4:15374222-15376961 FORWARD LENGTH=534
Length = 533
Score = 483 bits (1244), Expect = e-137, Method: Compositional matrix adjust.
Identities = 230/388 (59%), Positives = 285/388 (73%)
Query: 9 KNVLILMSDTGGGHRASAEALRDAFRLEFGDAYQVFVRDLGKEYGGWPLNDMERSYKFMI 68
K VLILMSDTGGGHRASAEA+R AF EFGD YQVF+ DL ++ WP N + RSY F++
Sbjct: 142 KKVLILMSDTGGGHRASAEAIRAAFNQEFGDEYQVFITDLWTDHTPWPFNQLPRSYNFLV 201
Query: 69 RHVRLWKVAFHGTSPRWVHGMYLAALAYFYANEVVAGIMRYNPDIIISVHPLMQHIPLWV 128
+H LWK+ ++GTSPR VH AA + F A E+ G+M+Y PDIIISVHPLMQH+PL V
Sbjct: 202 KHGTLWKMTYYGTSPRIVHQSNFAATSTFIAREIAQGLMKYQPDIIISVHPLMQHVPLRV 261
Query: 129 LKWQSLHPKVPFVTVITDLNTCHPTWFHHGVTRCYCPSAEVAKRALLRGLEPSQIRVYGL 188
L+ + L K+ F TVITDL+TCHPTWFH VTRCYCPS EVAKRA GLE SQI+VYGL
Sbjct: 262 LRSKGLLKKIVFTTVITDLSTCHPTWFHKLVTRCYCPSTEVAKRAQKAGLETSQIKVYGL 321
Query: 189 PIRPSFCRAVLDKDELRKELDMDPDLPAXXXXXXXXXXXXXXETARALSDELYDRRRRRP 248
P+RPSF + V K ELR+EL MD +LPA TARAL+D LYD+
Sbjct: 322 PVRPSFVKPVRPKVELRRELGMDENLPAVLLMGGGEGMGPIEATARALADALYDKNLGEA 381
Query: 249 VGQIVVICGRNQVLRSTLQSSRWNVPVKIRGFEKQMEKWMGACDCIITKAGPGTIAEALI 308
VGQ+++ICGRN+ L+S L S W +PV+++GF +ME+ MGACDCIITKAGPGTIAEA+I
Sbjct: 382 VGQVLIICGRNKKLQSKLSSLDWKIPVQVKGFITKMEECMGACDCIITKAGPGTIAEAMI 441
Query: 309 RGLPIILNDFIPGQEVGNVPYVVDNGAGVFSKDPREAARQVARWFTTHTNELRRYSLNAL 368
RGLPIILN +I GQE GNVPYVV+NG G FSK P+E ++ VA WF + EL S NAL
Sbjct: 442 RGLPIILNGYIAGQEAGNVPYVVENGCGKFSKSPKEISKIVADWFGPASKELEIMSQNAL 501
Query: 369 KLAQPEAVFDIVKDIHKLQQQPATVTRI 396
+LA+PEAVF IV D+H+L ++ ++ ++
Sbjct: 502 RLAKPEAVFKIVHDMHELVRKKNSLPQL 529
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.139 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,575,345
Number of extensions: 343140
Number of successful extensions: 952
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 950
Number of HSP's successfully gapped: 3
Length of query: 408
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 307
Effective length of database: 8,337,553
Effective search space: 2559628771
Effective search space used: 2559628771
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 113 (48.1 bits)