Os02g0802700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to MGDG synthase type A.
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Os02g0802700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to MGDG synthase type A.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 109.78 | 0.492 | 10.5 | 0.357 | 1.21 | -1.15 | -1.72 | 0.413 | 0.102 | 11.2 | 21.51 | 26118 | -- | -- |
| 109.88 | 0.488 | 10.5 | 0.463 | 1.2 | -1.33 | -1.73 | -- | 0.197 | 11.2 | 22.8 | 47520 | -- | -- |
| 119.82 | 0.51 | 10.4 | 0.532 | 1.21 | -1.28 | -- | 0.733 | 0.278 | 11.1 | 22.81 | 45047 | -- | -- |
| 122.44 | 0.515 | 10.5 | 0.415 | 1.21 | -1.33 | -- | -- | 0.192 | 11 | 22.7 | 47520 | -- | -- |
| 210.53 | 0.676 | 10.4 | 0.587 | -- | -1.33 | -- | 1 | 0.339 | -- | 23 | 45429 | -- | -- |
| 135 | 0.545 | 10.6 | -0.999 | 1.23 | -- | -1.66 | -- | -0.451 | 11.2 | -- | -- | -- | -- |
| 146.79 | 0.567 | 10.6 | -1.07 | 1.24 | -- | -- | -- | -0.458 | 11.1 | -- | -- | -- | -- |
| 213.45 | 0.68 | 10.5 | 0.534 | -- | -1.46 | -- | -- | 0.246 | -- | 22.66 | 47520 | -- | -- |
| 123.58 | 0.518 | 10.5 | -- | 1.22 | -1.07 | -- | -- | 0.0652 | 11.1 | 22.85 | 47520 | -- | -- |
| 242.96 | 0.728 | 10.7 | -1.1 | -- | -- | -- | -- | -0.468 | -- | -- | -- | -- | -- |
| 176.84 | 0.622 | 10.6 | -- | 1.25 | -- | -- | -- | -0.339 | 11.1 | -- | -- | -- | -- |
| 215.31 | 0.683 | 10.5 | -- | -- | -1.13 | -- | -- | 0.0872 | -- | 23.45 | 47520 | -- | -- |
| 274.69 | 0.774 | 10.6 | -- | -- | -- | -- | -- | -0.346 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 100.44 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 10 | 100.88 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 22 | 6 |
| 22 | 101.37 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 22 | 10 |
| 139 | 103.75 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 144 | 103.82 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 1 | 5 |
| 166 | 104.10 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 1 | 5 |
| 168 | 104.11 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 169 | 104.11 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 175 | 104.17 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 1 | 5 |
| 176 | 104.17 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 1 | 5 |
| 196 | 104.47 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 4 |
| 199 | 104.50 | radiation | 40.0 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 205 | 104.55 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 4 | 4 |
| 206 | 104.55 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 15 | 7 |
| 212 | 104.59 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 15 | 3 |
| 218 | 104.61 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 15 | 12 |
| 261 | 104.84 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 16 | 6 |
| 294 | 105.05 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 20 | 7 |
| 325 | 105.19 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 333 | 105.25 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 358 | 105.46 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 22 | 3 |
| 380 | 105.58 | radiation | 40.0 | 4320 | < th | dose dependent | rect. | 17 | 6 |
| 381 | 105.59 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 384 | 105.62 | radiation | 1.0 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 394 | 105.69 | humidity | 70.0 | 14400 | > th | dose dependent | sin | 10 | NA |
| 449 | 105.93 | radiation | 10.0 | 1440 | < th | dose dependent | sin | 15 | NA |
| 452 | 105.95 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 22 | 10 |
| 455 | 105.97 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 493 | 106.17 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 10 | 14 |
| 495 | 106.17 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 20 | 12 |
| 503 | 106.22 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 19 | 6 |
| 550 | 106.46 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 552 | 106.46 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 557 | 106.47 | humidity | 80.0 | 14400 | > th | dose independent | sin | 12 | NA |
| 559 | 106.48 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 18 | 10 |
| 561 | 106.49 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 15 | 16 |
| 569 | 106.51 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 16 | 3 |
| 601 | 106.64 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 20 | 13 |
| 634 | 106.76 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 10 | 13 |
| 639 | 106.78 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 20 | 13 |
| 652 | 106.81 | temperature | 15.0 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 688 | 106.92 | temperature | 15.0 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 690 | 106.92 | temperature | 15.0 | 43200 | > th | dose dependent | rect. | 19 | 3 |
| 696 | 106.94 | temperature | 30.0 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 718 | 106.98 | temperature | 10.0 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 719 | 106.98 | temperature | 30.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 722 | 106.99 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 3 | 15 |
| 746 | 107.08 | temperature | 30.0 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 748 | 107.08 | temperature | 30.0 | 43200 | < th | dose dependent | rect. | 19 | 3 |
| 758 | 107.11 | humidity | 80.0 | 43200 | > th | dose dependent | sin | 2 | NA |
| 787 | 107.13 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 12 | 18 |
| 791 | 107.14 | temperature | 30.0 | 43200 | < th | dose dependent | rect. | 19 | 7 |
| 821 | 107.18 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 838 | 107.19 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 6 | 9 |
| 866 | 107.21 | radiation | 20.0 | 4320 | > th | dose dependent | rect. | 15 | 17 |
| 867 | 107.21 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 3 | 20 |
| 905 | 107.24 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 7 | 17 |
| 929 | 107.26 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 950 | 107.27 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 996 | 107.30 | temperature | 30.0 | 43200 | < th | dose dependent | sin | 11 | NA |