BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0802700 Os02g0802700|AK100941
(406 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0802700 Similar to MGDG synthase type A 631 0.0
Os08g0299400 Similar to MGDG synthase type A 463 e-131
Os09g0423600 Similar to Monogalactosyldiacylglycerol syntha... 309 2e-84
>Os02g0802700 Similar to MGDG synthase type A
Length = 406
Score = 631 bits (1628), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/341 (95%), Positives = 324/341 (95%)
Query: 66 EAQVQEEPLLRGGAVAALASFYAKKVEAGLKKYKPDIIISVHPLMQHIPLWVLKWQGLQN 125
EAQVQEEPLLRGGAVAALASFYAKKVEAGLKKYKPDIIISVHPLMQHIPLWVLKWQGLQN
Sbjct: 66 EAQVQEEPLLRGGAVAALASFYAKKVEAGLKKYKPDIIISVHPLMQHIPLWVLKWQGLQN 125
Query: 126 RVVFVTVITDLNTCHPTWFHADVNRCYCPSEEVAKRAALDDLQPSQIRVFGLPIRPSFCR 185
RVVFVTVITDLNTCHPTWFHADVNRCYCPSEEVAKRAALDDLQPSQIRVFGLPIRPSFCR
Sbjct: 126 RVVFVTVITDLNTCHPTWFHADVNRCYCPSEEVAKRAALDDLQPSQIRVFGLPIRPSFCR 185
Query: 186 AVLVKDDLRKELELDPELPAVLLMGGGEGMGPVKKTAKALGESLFDKELGKPIGQLIVIC 245
AVLVKDDLRKELELDPELPAVLLMGGGEGMGPVKKTAKALGESLFDKELGKPIGQLIVIC
Sbjct: 186 AVLVKDDLRKELELDPELPAVLLMGGGEGMGPVKKTAKALGESLFDKELGKPIGQLIVIC 245
Query: 246 GRNKTLSSSLQALEWKIPIKVRGFETQMEKWMGACDCIITKAGPGTIAEALIRGLPIILN 305
GRNKTLSSSLQALEWKIPIKVRGFETQMEKWMGACDCIITKAGPGTIAEALIRGLPIILN
Sbjct: 246 GRNKTLSSSLQALEWKIPIKVRGFETQMEKWMGACDCIITKAGPGTIAEALIRGLPIILN 305
Query: 306 DFIPGQEVGNVPYVVDNGAGVFSKSSRETAKLVARWFGPDSDELKRMSEKALKLAQPEAV 365
DFIPGQEVGNVPYVVDNGAGVFSKSSRETAKLVARWFGPDSDELKRMSEKALKLAQPEAV
Sbjct: 306 DFIPGQEVGNVPYVVDNGAGVFSKSSRETAKLVARWFGPDSDELKRMSEKALKLAQPEAV 365
Query: 366 FDIVRDIHELSREQGVXXXXXXXXXXXXXXXXXETTPIQLM 406
FDIVRDIHELSREQGV ETTPIQLM
Sbjct: 366 FDIVRDIHELSREQGVISQISSSLTSSFFIPSPETTPIQLM 406
>Os08g0299400 Similar to MGDG synthase type A
Length = 408
Score = 463 bits (1192), Expect = e-131, Method: Compositional matrix adjust.
Identities = 226/304 (74%), Positives = 262/304 (86%)
Query: 75 LRGGAVAALASFYAKKVEAGLKKYKPDIIISVHPLMQHIPLWVLKWQGLQNRVVFVTVIT 134
+ G +AALA FYA +V AG+ +Y PDIIISVHPLMQHIPLWVLKWQ L +V FVTVIT
Sbjct: 86 VHGMYLAALAYFYANEVVAGIMRYNPDIIISVHPLMQHIPLWVLKWQSLHPKVPFVTVIT 145
Query: 135 DLNTCHPTWFHADVNRCYCPSEEVAKRAALDDLQPSQIRVFGLPIRPSFCRAVLVKDDLR 194
DLNTCHPTWFH V RCYCPS EVAKRA L L+PSQIRV+GLPIRPSFCRAVL KD+LR
Sbjct: 146 DLNTCHPTWFHHGVTRCYCPSAEVAKRALLRGLEPSQIRVYGLPIRPSFCRAVLDKDELR 205
Query: 195 KELELDPELPAVLLMGGGEGMGPVKKTAKALGESLFDKELGKPIGQLIVICGRNKTLSSS 254
KEL++DP+LPAVLLMGGGEGMGPV++TA+AL + L+D+ +P+GQ++VICGRN+ L S+
Sbjct: 206 KELDMDPDLPAVLLMGGGEGMGPVEETARALSDELYDRRRRRPVGQIVVICGRNQVLRST 265
Query: 255 LQALEWKIPIKVRGFETQMEKWMGACDCIITKAGPGTIAEALIRGLPIILNDFIPGQEVG 314
LQ+ W +P+K+RGFE QMEKWMGACDCIITKAGPGTIAEALIRGLPIILNDFIPGQEVG
Sbjct: 266 LQSSRWNVPVKIRGFEKQMEKWMGACDCIITKAGPGTIAEALIRGLPIILNDFIPGQEVG 325
Query: 315 NVPYVVDNGAGVFSKSSRETAKLVARWFGPDSDELKRMSEKALKLAQPEAVFDIVRDIHE 374
NVPYVVDNGAGVFSK RE A+ VARWF ++EL+R S ALKLAQPEAVFDIV+DIH+
Sbjct: 326 NVPYVVDNGAGVFSKDPREAARQVARWFTTHTNELRRYSLNALKLAQPEAVFDIVKDIHK 385
Query: 375 LSRE 378
L ++
Sbjct: 386 LQQQ 389
>Os09g0423600 Similar to Monogalactosyldiacylglycerol synthase (EC 2.4.1.46)
Length = 239
Score = 309 bits (792), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 155/229 (67%), Positives = 194/229 (84%)
Query: 151 CYCPSEEVAKRAALDDLQPSQIRVFGLPIRPSFCRAVLVKDDLRKELELDPELPAVLLMG 210
CYCPS EV+KRA LQPSQI+V+GLP+RPSF + + +D+LR+EL +D LPAVLLMG
Sbjct: 1 CYCPSAEVSKRALKAGLQPSQIKVYGLPVRPSFVKPIRPEDELRRELGMDEYLPAVLLMG 60
Query: 211 GGEGMGPVKKTAKALGESLFDKELGKPIGQLIVICGRNKTLSSSLQALEWKIPIKVRGFE 270
GGEGMGP++ TA+ALG++L+D+ LG+P GQ++VICGRNK L+S LQ++ WK+P++V+GF
Sbjct: 61 GGEGMGPIEATARALGDALYDEVLGEPTGQILVICGRNKKLTSRLQSINWKVPVQVKGFV 120
Query: 271 TQMEKWMGACDCIITKAGPGTIAEALIRGLPIILNDFIPGQEVGNVPYVVDNGAGVFSKS 330
T+ME+ MGACDCIITKAGPGTIAEA+IRGLPIILN +I GQE GNVPYVVDNG G FSKS
Sbjct: 121 TKMEECMGACDCIITKAGPGTIAEAMIRGLPIILNGYIAGQEAGNVPYVVDNGCGKFSKS 180
Query: 331 SRETAKLVARWFGPDSDELKRMSEKALKLAQPEAVFDIVRDIHELSREQ 379
+ AK+VA WFGP SDELK MS+ ALKLA+P+AVF IV D+HEL R++
Sbjct: 181 PEQIAKIVADWFGPRSDELKMMSQNALKLARPDAVFKIVHDLHELVRQK 229
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.138 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,212,724
Number of extensions: 472858
Number of successful extensions: 1135
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1135
Number of HSP's successfully gapped: 3
Length of query: 406
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 303
Effective length of database: 11,657,759
Effective search space: 3532300977
Effective search space used: 3532300977
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)