Os09g0423600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Monogalactosyldiacylglycerol synthase (EC 2.4.1.46).
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Os09g0423600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Monogalactosyldiacylglycerol synthase (EC 2.4.1.46).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.88 | 0.269 | 11.8 | 0.617 | 0.48 | -0.335 | -0.545 | -1.98 | 0.128 | 4.54 | 30.31 | 2280 | -- | -- |
| 36.83 | 0.285 | 11.8 | 0.151 | 0.609 | -0.44 | -0.28 | -- | 0.00626 | 3.82 | 33.15 | 3672 | -- | -- |
| 33.54 | 0.27 | 11.8 | 0.633 | 0.487 | -0.322 | -- | -2.09 | 0.14 | 4.41 | 31.54 | 2077 | -- | -- |
| 36.91 | 0.285 | 11.8 | 0.148 | 0.616 | -0.507 | -- | -- | 0.00364 | 3.73 | 71.16 | 3651 | -- | -- |
| 45.13 | 0.313 | 11.8 | 0.569 | -- | -0.419 | -- | -1.92 | 0.126 | -- | 28.4 | 2624 | -- | -- |
| 38.88 | 0.292 | 11.8 | 0.243 | 0.488 | -- | -0.438 | -- | 0.0723 | 4.3 | -- | -- | -- | -- |
| 39.38 | 0.294 | 11.8 | 0.246 | 0.485 | -- | -- | -- | 0.0747 | 4.14 | -- | -- | -- | -- |
| 48.77 | 0.325 | 11.8 | 0.114 | -- | -0.396 | -- | -- | 0.00485 | -- | 83.09 | 2667 | -- | -- |
| 37.43 | 0.287 | 11.8 | -- | 0.638 | -0.578 | -- | -- | -0.0213 | 3.68 | 71.16 | 3651 | -- | -- |
| 52.11 | 0.337 | 11.8 | 0.266 | -- | -- | -- | -- | 0.0876 | -- | -- | -- | -- | -- |
| 40.98 | 0.299 | 11.8 | -- | 0.489 | -- | -- | -- | 0.0472 | 4.13 | -- | -- | -- | -- |
| 49.01 | 0.326 | 11.9 | -- | -- | -0.446 | -- | -- | -0.0145 | -- | 99.61 | 2678 | -- | -- |
| 53.98 | 0.343 | 11.8 | -- | -- | -- | -- | -- | 0.0581 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.88 | temperature | 25 | 270 | > th | dose dependent | rect. | 18 | 20 |
| 5 | 31.27 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 16 |
| 8 | 31.38 | temperature | 25 | 270 | > th | dose dependent | sin | 8 | NA |
| 15 | 31.78 | temperature | 30 | 90 | < th | dose independent | rect. | 1 | 16 |
| 24 | 31.82 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 22 |
| 35 | 31.98 | temperature | 30 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 50 | 32.01 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 21 |
| 57 | 32.09 | temperature | 30 | 90 | < th | dose independent | sin | 5 | NA |
| 64 | 32.17 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 80 | 32.18 | temperature | 20 | 720 | > th | dose dependent | rect. | 2 | 12 |
| 81 | 32.18 | temperature | 25 | 10 | > th | dose dependent | rect. | 20 | 20 |
| 90 | 32.23 | temperature | 30 | 14400 | < th | dose independent | rect. | 2 | 7 |
| 92 | 32.23 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 14 |
| 100 | 32.25 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 16 |
| 109 | 32.30 | temperature | 30 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 134 | 32.37 | temperature | 30 | 90 | > th | dose independent | rect. | 8 | 7 |
| 176 | 32.49 | temperature | 25 | 720 | < th | dose dependent | sin | 0 | NA |
| 195 | 32.54 | temperature | 25 | 270 | > th | dose dependent | rect. | 5 | 8 |
| 211 | 32.59 | temperature | 30 | 90 | > th | dose independent | sin | 4 | NA |
| 218 | 32.60 | temperature | 30 | 720 | < th | dose dependent | rect. | 6 | 9 |
| 266 | 32.71 | wind | 1 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 290 | 32.75 | wind | 1 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 291 | 32.75 | temperature | 30 | 10 | > th | dose independent | rect. | 9 | 7 |
| 307 | 32.76 | atmosphere | 1000 | 10 | > th | dose independent | sin | 21 | NA |
| 318 | 32.80 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 17 |
| 320 | 32.81 | temperature | 30 | 270 | > th | dose independent | sin | 7 | NA |
| 346 | 32.85 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 7 |
| 414 | 32.93 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 487 | 32.98 | temperature | 25 | 10 | > th | dose dependent | rect. | 4 | 12 |
| 523 | 33.01 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 9 | 15 |
| 535 | 33.02 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 3 |
| 549 | 33.02 | temperature | 15 | 720 | > th | dose dependent | rect. | 8 | 6 |
| 562 | 33.03 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 563 | 33.03 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 587 | 33.05 | temperature | 30 | 1440 | < th | dose dependent | rect. | 9 | 12 |
| 645 | 33.09 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 672 | 33.10 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 679 | 33.11 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 9 | 13 |
| 699 | 33.11 | temperature | 30 | 1440 | < th | dose dependent | rect. | 9 | 17 |
| 706 | 33.12 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 711 | 33.12 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 760 | 33.14 | temperature | 10 | 4320 | > th | dose dependent | rect. | 20 | 5 |
| 772 | 33.15 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 7 |
| 780 | 33.15 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 9 |
| 837 | 33.17 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 5 |
| 850 | 33.18 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 890 | 33.19 | temperature | 30 | 1440 | < th | dose dependent | no | NA | NA |
| 947 | 33.20 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 948 | 33.20 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 23 |
| 955 | 33.21 | temperature | 30 | 1440 | < th | dose dependent | rect. | 10 | 2 |