BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0230200 Os08g0230200|AK069639
(482 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0230200 Conserved hypothetical protein 840 0.0
Os04g0606500 Conserved hypothetical protein 706 0.0
Os04g0541900 Conserved hypothetical protein 134 1e-31
Os06g0636300 Conserved hypothetical protein 124 2e-28
>Os08g0230200 Conserved hypothetical protein
Length = 482
Score = 840 bits (2169), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/482 (86%), Positives = 419/482 (86%)
Query: 1 MGSRFPSHQLSNGLYVSGRPEQPKEKAPVICSTAMPYTGGDIKKSGELGKMFDLHVEKSR 60
MGSRFPSHQLSNGLYVSGRPEQPKEKAPVICSTAMPYTGGDIKKSGELGKMFDLHVEKSR
Sbjct: 1 MGSRFPSHQLSNGLYVSGRPEQPKEKAPVICSTAMPYTGGDIKKSGELGKMFDLHVEKSR 60
Query: 61 KSGPLGNQPSRNTSFGGAGSNSGPVSNALXXXXXXXXXXXXXXXXXXXARAKSNSGPLNK 120
KSGPLGNQPSRNTSFGGAGSNSGPVSNAL ARAKSNSGPLNK
Sbjct: 61 KSGPLGNQPSRNTSFGGAGSNSGPVSNALGRSNYSGSISSSVPGAGGSARAKSNSGPLNK 120
Query: 121 HXXXXXXXXXXXXXXVTPMARQNSXXXXXXXXXXXXITSGPISSGPLNSSGAPRKVSGPL 180
H VTPMARQNS ITSGPISSGPLNSSGAPRKVSGPL
Sbjct: 121 HGEPGKKSSGPQSGGVTPMARQNSGPLPPVLPTTGLITSGPISSGPLNSSGAPRKVSGPL 180
Query: 181 DPSVSMKMRATSFAHNPAVTNLNADDGYSIKGSIPKTILWMVILLFLMGFIAGGFILGAV 240
DPSVSMKMRATSFAHNPAVTNLNADDGYSIKGSIPKTILWMVILLFLMGFIAGGFILGAV
Sbjct: 181 DPSVSMKMRATSFAHNPAVTNLNADDGYSIKGSIPKTILWMVILLFLMGFIAGGFILGAV 240
Query: 241 HNPXXXXXXXXXXXXXXXXXXWNICWGTRGVTGFVSRYPDADLRTAKDGQYVKVTGVVTC 300
HNP WNICWGTRGVTGFVSRYPDADLRTAKDGQYVKVTGVVTC
Sbjct: 241 HNPILLVVVVVIFCFVAALVIWNICWGTRGVTGFVSRYPDADLRTAKDGQYVKVTGVVTC 300
Query: 301 GNFPLESSFQRVPRCVYTSTCLYEYRGWDSKAANTEHRQFTWGLRSMERHAVDFYISDFQ 360
GNFPLESSFQRVPRCVYTSTCLYEYRGWDSKAANTEHRQFTWGLRSMERHAVDFYISDFQ
Sbjct: 301 GNFPLESSFQRVPRCVYTSTCLYEYRGWDSKAANTEHRQFTWGLRSMERHAVDFYISDFQ 360
Query: 361 SGLRALVKTGYGARVTPYVDESVVIDINPDNKDMSPEFLRWLRERNLSSDDRIMRLKEGY 420
SGLRALVKTGYGARVTPYVDESVVIDINPDNKDMSPEFLRWLRERNLSSDDRIMRLKEGY
Sbjct: 361 SGLRALVKTGYGARVTPYVDESVVIDINPDNKDMSPEFLRWLRERNLSSDDRIMRLKEGY 420
Query: 421 IKEGSTVSVMGVVQRNDNVLMIVPPSEPISTGCQWAKCILPTSLDGLVLRCEDTSNIDVI 480
IKEGSTVSVMGVVQRNDNVLMIVPPSEPISTGCQWAKCILPTSLDGLVLRCEDTSNIDVI
Sbjct: 421 IKEGSTVSVMGVVQRNDNVLMIVPPSEPISTGCQWAKCILPTSLDGLVLRCEDTSNIDVI 480
Query: 481 PV 482
PV
Sbjct: 481 PV 482
>Os04g0606500 Conserved hypothetical protein
Length = 482
Score = 706 bits (1821), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/482 (73%), Positives = 374/482 (77%)
Query: 1 MGSRFPSHQLSNGLYVSGRPEQPKEKAPVICSTAMPYTGGDIKKSGELGKMFDLHVEKSR 60
MGSRFPSHQLSNGLYVSGRPEQPKEKAP ICSTAMPYTGGDIKKSGELGKMF+LH KSR
Sbjct: 1 MGSRFPSHQLSNGLYVSGRPEQPKEKAPTICSTAMPYTGGDIKKSGELGKMFELHAVKSR 60
Query: 61 KSGPLGNQPSRNTSFGGAGSNSGPVSNALXXXXXXXXXXXXXXXXXXXARAKSNSGPLNK 120
KSGPL N PSRN SFGGA SNSGPV NA ARAKS+SGPLNK
Sbjct: 61 KSGPLSNAPSRNASFGGAASNSGPVPNAGDRSNYSGSLSSSVPGASGSARAKSSSGPLNK 120
Query: 121 HXXXXXXXXXXXXXXVTPMARQNSXXXXXXXXXXXXITSGPISSGPLNSSGAPRKVSGPL 180
H VTPMARQNS ITSGPI+SGPLNSSGA RKVSGPL
Sbjct: 121 HGEPVKRSSGPQSGGVTPMARQNSGPLPPMLPTTGLITSGPITSGPLNSSGAQRKVSGPL 180
Query: 181 DPSVSMKMRATSFAHNPAVTNLNADDGYSIKGSIPKTILWMVILLFLMGFIAGGFILGAV 240
D + S K RATSF+HN AVT + +D YSI GS+ K IL V +LF++G IAG IL AV
Sbjct: 181 DSAASKKTRATSFSHNQAVTKITTEDSYSITGSLSKLILGAVGVLFVLGLIAGILILSAV 240
Query: 241 HNPXXXXXXXXXXXXXXXXXXWNICWGTRGVTGFVSRYPDADLRTAKDGQYVKVTGVVTC 300
HN WN CW RGV GFV RY DADLRTAKDGQY+KVTGVVTC
Sbjct: 241 HNAILLIVVLVLFGFVAALFIWNACWARRGVIGFVDRYSDADLRTAKDGQYIKVTGVVTC 300
Query: 301 GNFPLESSFQRVPRCVYTSTCLYEYRGWDSKAANTEHRQFTWGLRSMERHAVDFYISDFQ 360
GNFPLESS+QRVPRCVYTST L+EYRGWDSKAANT+H +FTWGLRSME+HAVDFYISDFQ
Sbjct: 301 GNFPLESSYQRVPRCVYTSTTLHEYRGWDSKAANTQHHRFTWGLRSMEQHAVDFYISDFQ 360
Query: 361 SGLRALVKTGYGARVTPYVDESVVIDINPDNKDMSPEFLRWLRERNLSSDDRIMRLKEGY 420
SGLRALVK GYGARVTP+VDESV+IDI+PDNKDMSPEF RWLRERNLSSDDRIMRLKEGY
Sbjct: 361 SGLRALVKAGYGARVTPFVDESVIIDIDPDNKDMSPEFRRWLRERNLSSDDRIMRLKEGY 420
Query: 421 IKEGSTVSVMGVVQRNDNVLMIVPPSEPISTGCQWAKCILPTSLDGLVLRCEDTSNIDVI 480
IKEGSTVSVMGVVQ+NDNVLMIVPP EPISTGCQWAKC+LP L GLVLRCEDTSNIDVI
Sbjct: 421 IKEGSTVSVMGVVQKNDNVLMIVPPPEPISTGCQWAKCVLPRDLYGLVLRCEDTSNIDVI 480
Query: 481 PV 482
V
Sbjct: 481 AV 482
>Os04g0541900 Conserved hypothetical protein
Length = 295
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 108/194 (55%), Gaps = 4/194 (2%)
Query: 229 GFIAGGFILGAVHNPXXXXXXXXXXXXXXXXXXWNICWGT--RGVTGFVSRYPDADLRTA 286
G G +L VH+ WN R + FV P + LR+A
Sbjct: 61 GLGLGALVLAVVHSAALLVVAVLLSAAVVAFLLWNAAASASGRALRRFVDGLPASSLRSA 120
Query: 287 KDGQYVKVTGVVTCGNFPLESSFQRVPRCVYTSTCLYEYRGWDSKAANTEHRQFTWGLRS 346
D Q VK+TG+V CG+ L SS+++V CVYTST L + W S+ AN ++R W L
Sbjct: 121 TDDQLVKITGLVACGDISLISSYEKVENCVYTSTLLRKCGRWGSEVANPKNRCSKWKLTH 180
Query: 347 MERHAVDFYISDFQSGLRALVKTGYGARVTPYVDESVVIDINPDNKDMSPEFLRWLRERN 406
ER A DFYI+D +SG RALVK G+ +RV P +DE++++ + N ++S WL ERN
Sbjct: 181 AERFAADFYITDAKSGKRALVKAGHDSRVVPLIDENLLVTTS-GNTELSSTLRCWLDERN 239
Query: 407 LSSDD-RIMRLKEG 419
+ S++ +++RL+EG
Sbjct: 240 IPSEECQLIRLEEG 253
>Os06g0636300 Conserved hypothetical protein
Length = 414
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 108/210 (51%), Gaps = 14/210 (6%)
Query: 262 WNICWGTRGVTGFVSRYPDA--DLRTAKDGQYVKVTGVVTCGNFPLESSFQRVPRCVYTS 319
WN+ F R PD D G+ VK+TG VTCG+ PL + F RC++TS
Sbjct: 185 WNVRRRDAEAERFFRRLPDTVFDQSDMPIGELVKITGQVTCGHQPLGARFHDAARCIFTS 244
Query: 320 TCLYEYRGWDSKAANTEHRQFTWGLRSMERHAVDFYISDFQSGLRALVKTGYGARVTPYV 379
LYE RG F W E +FYISD +G R V+ G G ++T +
Sbjct: 245 VQLYERRGC----------CFRWQQTHSETRTANFYISDRNTGKRFYVRAGEGGKITWMI 294
Query: 380 DESVVIDINPDNKDMSPEFLRWLRERNLSSDDRIMRLKEGYIKEGSTVSVMGVVQRNDNV 439
+ ++ + K S W+ +LS D + +KEG+I+EG T SV+GV++++
Sbjct: 295 KQKT-DSLDGERKGASRNLKSWMASNDLSCDGTV-HVKEGFIREGDTASVIGVLKKHHAY 352
Query: 440 LMIVPPSEPISTGCQWAKCILPTSLDGLVL 469
++ PS ++TGCQ+ +C+ P ++GL+L
Sbjct: 353 DIVDAPSGVVTTGCQFTRCMFPVHVEGLIL 382
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.134 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,322,213
Number of extensions: 607316
Number of successful extensions: 1449
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1439
Number of HSP's successfully gapped: 4
Length of query: 482
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 377
Effective length of database: 11,553,331
Effective search space: 4355605787
Effective search space used: 4355605787
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)