Os04g0606500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0606500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.68 | 0.224 | 9.83 | 0.933 | 0.801 | 0.461 | -1.1 | 2.88 | 0.196 | 14.1 | 10.63 | 1746 | -- | -- |
| 24.06 | 0.228 | 9.88 | 0.366 | 0.793 | 0.546 | -1.11 | -- | 0.194 | 14 | 29.3 | 1700 | -- | -- |
| 25.46 | 0.235 | 9.82 | 0.975 | 0.85 | 0.45 | -- | 2.94 | 0.212 | 14.1 | 12.77 | 2453 | -- | -- |
| 27.43 | 0.244 | 9.89 | 0.282 | 0.866 | 0.469 | -- | -- | 0.165 | 14.2 | 28.67 | 1285 | -- | -- |
| 52.07 | 0.338 | 9.94 | 0.233 | -- | 1.25 | -- | 0.574 | -0.056 | -- | 14.5 | 1786 | -- | -- |
| 33.38 | 0.271 | 9.9 | 0.449 | 0.797 | -- | -1.09 | -- | 0.117 | 14.2 | -- | -- | -- | -- |
| 37.85 | 0.288 | 9.9 | 0.418 | 0.796 | -- | -- | -- | 0.11 | 14.2 | -- | -- | -- | -- |
| 52.35 | 0.338 | 9.95 | 0.154 | -- | 1.27 | -- | -- | -0.0778 | -- | 14.5 | 1786 | -- | -- |
| 29.42 | 0.253 | 9.9 | -- | 0.867 | 0.528 | -- | -- | 0.124 | 14.1 | 28.2 | 1288 | -- | -- |
| 75.61 | 0.406 | 9.91 | 0.385 | -- | -- | -- | -- | 0.0912 | -- | -- | -- | -- | -- |
| 42.46 | 0.305 | 9.91 | -- | 0.788 | -- | -- | -- | 0.0639 | 14.2 | -- | -- | -- | -- |
| 52.94 | 0.34 | 9.95 | -- | -- | 1.31 | -- | -- | -0.1 | -- | 14.5 | 1786 | -- | -- |
| 79.51 | 0.416 | 9.92 | -- | -- | -- | -- | -- | 0.0485 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.58 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 9 | 21.97 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 2 |
| 38 | 22.35 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 16 |
| 84 | 22.46 | temperature | 10 | 1440 | > th | dose dependent | sin | 19 | NA |
| 347 | 22.89 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |
| 355 | 22.90 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 23 |
| 362 | 22.91 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 518 | 23.07 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 9 |
| 635 | 23.16 | humidity | 90 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 780 | 23.27 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 5 |
| 842 | 23.32 | temperature | 10 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 844 | 23.32 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 1 |
| 863 | 23.34 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 3 |
| 909 | 23.37 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 17 |