BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0606500 Os04g0606500|AK068251
         (482 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0606500  Conserved hypothetical protein                      800   0.0  
Os08g0230200  Conserved hypothetical protein                      689   0.0  
Os04g0541900  Conserved hypothetical protein                      135   1e-31
Os06g0636300  Conserved hypothetical protein                      120   3e-27

>Os04g0606500 Conserved hypothetical protein
          Length = 482

 Score =  800 bits (2066), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/482 (82%), Positives = 399/482 (82%)

Query: 1   MGSRFPSHQLSNGLYVSGRPEQPKEKAPTICSTAMPYTGGDIKKSGELGKMFELHAVKSR 60
           MGSRFPSHQLSNGLYVSGRPEQPKEKAPTICSTAMPYTGGDIKKSGELGKMFELHAVKSR
Sbjct: 1   MGSRFPSHQLSNGLYVSGRPEQPKEKAPTICSTAMPYTGGDIKKSGELGKMFELHAVKSR 60

Query: 61  KSGPLSNAPSRNASFGGAASNSGPVPNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLNK 120
           KSGPLSNAPSRNASFGGAASNSGPVPNA                            PLNK
Sbjct: 61  KSGPLSNAPSRNASFGGAASNSGPVPNAGDRSNYSGSLSSSVPGASGSARAKSSSGPLNK 120

Query: 121 HGEPVKRSSGPQSGGVTPMARQNSXXXXXXXXXXXXITSGPITSGPLNSSGAQRKVSGPL 180
           HGEPVKRSSGPQSGGVTPMARQNS            ITSGPITSGPLNSSGAQRKVSGPL
Sbjct: 121 HGEPVKRSSGPQSGGVTPMARQNSGPLPPMLPTTGLITSGPITSGPLNSSGAQRKVSGPL 180

Query: 181 DSAASKKTRATSFSHNQAVTKITTEDSYSITGSLSKXXXXXXXXXXXXXXXXXXXXXXXX 240
           DSAASKKTRATSFSHNQAVTKITTEDSYSITGSLSK                        
Sbjct: 181 DSAASKKTRATSFSHNQAVTKITTEDSYSITGSLSKLILGAVGVLFVLGLIAGILILSAV 240

Query: 241 HNXXXXXXXXXXXXXXXXXXXWNACWARRGVIGFVDRYSDADLRTAKDGQYIKVTGVVTC 300
           HN                   WNACWARRGVIGFVDRYSDADLRTAKDGQYIKVTGVVTC
Sbjct: 241 HNAILLIVVLVLFGFVAALFIWNACWARRGVIGFVDRYSDADLRTAKDGQYIKVTGVVTC 300

Query: 301 GNFPLESSYQRVPRCVYTSTTLHEYRGWDSKAANTQHHRFTWGLRSMEQHAVDFYISDFQ 360
           GNFPLESSYQRVPRCVYTSTTLHEYRGWDSKAANTQHHRFTWGLRSMEQHAVDFYISDFQ
Sbjct: 301 GNFPLESSYQRVPRCVYTSTTLHEYRGWDSKAANTQHHRFTWGLRSMEQHAVDFYISDFQ 360

Query: 361 SGLRALVKAGYGARVTPFVDESVIIDIDPDNKDMSPEFRRWLRERNLSSDDRIMRLKEGY 420
           SGLRALVKAGYGARVTPFVDESVIIDIDPDNKDMSPEFRRWLRERNLSSDDRIMRLKEGY
Sbjct: 361 SGLRALVKAGYGARVTPFVDESVIIDIDPDNKDMSPEFRRWLRERNLSSDDRIMRLKEGY 420

Query: 421 IKEGSTVSVMGVVQKNDNVLMIVPPPEPISTGCQWAKCVLPRDLYGLVLRCEDTSNIDVI 480
           IKEGSTVSVMGVVQKNDNVLMIVPPPEPISTGCQWAKCVLPRDLYGLVLRCEDTSNIDVI
Sbjct: 421 IKEGSTVSVMGVVQKNDNVLMIVPPPEPISTGCQWAKCVLPRDLYGLVLRCEDTSNIDVI 480

Query: 481 AV 482
           AV
Sbjct: 481 AV 482



>Os08g0230200 Conserved hypothetical protein
          Length = 482

 Score =  689 bits (1779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/482 (71%), Positives = 363/482 (75%)

Query: 1   MGSRFPSHQLSNGLYVSGRPEQPKEKAPTICSTAMPYTGGDIKKSGELGKMFELHAVKSR 60
           MGSRFPSHQLSNGLYVSGRPEQPKEKAP ICSTAMPYTGGDIKKSGELGKMF+LH  KSR
Sbjct: 1   MGSRFPSHQLSNGLYVSGRPEQPKEKAPVICSTAMPYTGGDIKKSGELGKMFDLHVEKSR 60

Query: 61  KSGPLSNAPSRNASFGGAASNSGPVPNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLNK 120
           KSGPL N PSRN SFGGA SNSGPV NA                            PLNK
Sbjct: 61  KSGPLGNQPSRNTSFGGAGSNSGPVSNALGRSNYSGSISSSVPGAGGSARAKSNSGPLNK 120

Query: 121 HGEPVKRSSGPQSGGVTPMARQNSXXXXXXXXXXXXITSGPITSGPLNSSGAQRKVSGPL 180
           HGEP K+SSGPQSGGVTPMARQNS            ITSGPI+SGPLNSSGA RKVSGPL
Sbjct: 121 HGEPGKKSSGPQSGGVTPMARQNSGPLPPVLPTTGLITSGPISSGPLNSSGAPRKVSGPL 180

Query: 181 DSAASKKTRATSFSHNQAVTKITTEDSYSITGSLSKXXXXXXXXXXXXXXXXXXXXXXXX 240
           D + S K RATSF+HN AVT +  +D YSI GS+ K                        
Sbjct: 181 DPSVSMKMRATSFAHNPAVTNLNADDGYSIKGSIPKTILWMVILLFLMGFIAGGFILGAV 240

Query: 241 HNXXXXXXXXXXXXXXXXXXXWNACWARRGVIGFVDRYSDADLRTAKDGQYIKVTGVVTC 300
           HN                   WN CW  RGV GFV RY DADLRTAKDGQY+KVTGVVTC
Sbjct: 241 HNPILLVVVVVIFCFVAALVIWNICWGTRGVTGFVSRYPDADLRTAKDGQYVKVTGVVTC 300

Query: 301 GNFPLESSYQRVPRCVYTSTTLHEYRGWDSKAANTQHHRFTWGLRSMEQHAVDFYISDFQ 360
           GNFPLESS+QRVPRCVYTST L+EYRGWDSKAANT+H +FTWGLRSME+HAVDFYISDFQ
Sbjct: 301 GNFPLESSFQRVPRCVYTSTCLYEYRGWDSKAANTEHRQFTWGLRSMERHAVDFYISDFQ 360

Query: 361 SGLRALVKAGYGARVTPFVDESVIIDIDPDNKDMSPEFRRWLRERNLSSDDRIMRLKEGY 420
           SGLRALVK GYGARVTP+VDESV+IDI+PDNKDMSPEF RWLRERNLSSDDRIMRLKEGY
Sbjct: 361 SGLRALVKTGYGARVTPYVDESVVIDINPDNKDMSPEFLRWLRERNLSSDDRIMRLKEGY 420

Query: 421 IKEGSTVSVMGVVQKNDNVLMIVPPPEPISTGCQWAKCVLPRDLYGLVLRCEDTSNIDVI 480
           IKEGSTVSVMGVVQ+NDNVLMIVPP EPISTGCQWAKC+LP  L GLVLRCEDTSNIDVI
Sbjct: 421 IKEGSTVSVMGVVQRNDNVLMIVPPSEPISTGCQWAKCILPTSLDGLVLRCEDTSNIDVI 480

Query: 481 AV 482
            V
Sbjct: 481 PV 482



>Os04g0541900 Conserved hypothetical protein
          Length = 295

 Score =  135 bits (339), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 70/161 (43%), Positives = 103/161 (63%), Gaps = 4/161 (2%)

Query: 262 WNACWAR--RGVIGFVDRYSDADLRTAKDGQYIKVTGVVTCGNFPLESSYQRVPRCVYTS 319
           WNA  +   R +  FVD    + LR+A D Q +K+TG+V CG+  L SSY++V  CVYTS
Sbjct: 94  WNAAASASGRALRRFVDGLPASSLRSATDDQLVKITGLVACGDISLISSYEKVENCVYTS 153

Query: 320 TTLHEYRGWDSKAANTQHHRFTWGLRSMEQHAVDFYISDFQSGLRALVKAGYGARVTPFV 379
           T L +   W S+ AN ++    W L   E+ A DFYI+D +SG RALVKAG+ +RV P +
Sbjct: 154 TLLRKCGRWGSEVANPKNRCSKWKLTHAERFAADFYITDAKSGKRALVKAGHDSRVVPLI 213

Query: 380 DESVIIDIDPDNKDMSPEFRRWLRERNLSSDD-RIMRLKEG 419
           DE++++     N ++S   R WL ERN+ S++ +++RL+EG
Sbjct: 214 DENLLVTTS-GNTELSSTLRCWLDERNIPSEECQLIRLEEG 253



>Os06g0636300 Conserved hypothetical protein
          Length = 414

 Score =  120 bits (300), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 62/181 (34%), Positives = 100/181 (55%), Gaps = 12/181 (6%)

Query: 289 GQYIKVTGVVTCGNFPLESSYQRVPRCVYTSTTLHEYRGWDSKAANTQHHRFTWGLRSME 348
           G+ +K+TG VTCG+ PL + +    RC++TS  L+E RG            F W     E
Sbjct: 214 GELVKITGQVTCGHQPLGARFHDAARCIFTSVQLYERRGCC----------FRWQQTHSE 263

Query: 349 QHAVDFYISDFQSGLRALVKAGYGARVTPFVDESVIIDIDPDNKDMSPEFRRWLRERNLS 408
               +FYISD  +G R  V+AG G ++T  + +     +D + K  S   + W+   +LS
Sbjct: 264 TRTANFYISDRNTGKRFYVRAGEGGKITWMIKQKTD-SLDGERKGASRNLKSWMASNDLS 322

Query: 409 SDDRIMRLKEGYIKEGSTVSVMGVVQKNDNVLMIVPPPEPISTGCQWAKCVLPRDLYGLV 468
            D  +  +KEG+I+EG T SV+GV++K+    ++  P   ++TGCQ+ +C+ P  + GL+
Sbjct: 323 CDGTV-HVKEGFIREGDTASVIGVLKKHHAYDIVDAPSGVVTTGCQFTRCMFPVHVEGLI 381

Query: 469 L 469
           L
Sbjct: 382 L 382



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.131    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,479,421
Number of extensions: 558983
Number of successful extensions: 1084
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1076
Number of HSP's successfully gapped: 4
Length of query: 482
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 377
Effective length of database: 11,553,331
Effective search space: 4355605787
Effective search space used: 4355605787
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 158 (65.5 bits)