BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0220600 Os08g0220600|AK105274
(630 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0220600 Fibronectin, type III domain containing protein 1280 0.0
Os02g0152500 Fibronectin, type III-like fold domain contain... 319 3e-87
Os05g0145400 Fibronectin, type III-like fold domain contain... 304 1e-82
>Os08g0220600 Fibronectin, type III domain containing protein
Length = 630
Score = 1280 bits (3312), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 617/630 (97%), Positives = 617/630 (97%)
Query: 1 MDPGKHNGMSLKDRRELVYEVSQWPQGASEILQCWTRRDLLELICAELGKERKYTNVPKS 60
MDPGKHNGMSLKDRRELVYEVSQWPQGASEILQCWTRRDLLELICAELGKERKYTNVPKS
Sbjct: 1 MDPGKHNGMSLKDRRELVYEVSQWPQGASEILQCWTRRDLLELICAELGKERKYTNVPKS 60
Query: 61 KMIAYLLKLVLRKNGQPKDDNANASILGQXXXXXXXXXXXXXQPHHFSRSAKSDSSMCRE 120
KMIAYLLKLVLRKNGQPKDDNANASILGQ QPHHFSRSAKSDSSMCRE
Sbjct: 61 KMIAYLLKLVLRKNGQPKDDNANASILGQNNKDDTEKKENEEQPHHFSRSAKSDSSMCRE 120
Query: 121 AQAGSTAVCRNVACQATLNSGDAYCKRCSCCICHKYDENKDPSLWLVCSSDTPYSGYSCG 180
AQAGSTAVCRNVACQATLNSGDAYCKRCSCCICHKYDENKDPSLWLVCSSDTPYSGYSCG
Sbjct: 121 AQAGSTAVCRNVACQATLNSGDAYCKRCSCCICHKYDENKDPSLWLVCSSDTPYSGYSCG 180
Query: 181 TSCHLKCALKNKKAGIFKNGCNKKSDGSFYCVWCGKMNWLMRNLRKQLAIARESRRVDVL 240
TSCHLKCALKNKKAGIFKNGCNKKSDGSFYCVWCGKMNWLMRNLRKQLAIARESRRVDVL
Sbjct: 181 TSCHLKCALKNKKAGIFKNGCNKKSDGSFYCVWCGKMNWLMRNLRKQLAIARESRRVDVL 240
Query: 241 CERLSLTHKMVKGSERYRELANIINSAVKILEKEVGCALDQVSAITGRGIVNRLCCGADV 300
CERLSLTHKMVKGSERYRELANIINSAVKILEKEVGCALDQVSAITGRGIVNRLCCGADV
Sbjct: 241 CERLSLTHKMVKGSERYRELANIINSAVKILEKEVGCALDQVSAITGRGIVNRLCCGADV 300
Query: 301 QKLCSCALEMVDSTLSSTLDFETNNNLEAPGPQPQVFFVEITPFSVLVVLKYQDNIAEEI 360
QKLCSCALEMVDSTLSSTLDFETNNNLEAPGPQPQVFFVEITPFSVLVVLKYQDNIAEEI
Sbjct: 301 QKLCSCALEMVDSTLSSTLDFETNNNLEAPGPQPQVFFVEITPFSVLVVLKYQDNIAEEI 360
Query: 361 DGCKVWHRSANMANYPAEPTCHVLRPNTRSLFSGLSPSTEYFFKVLPFGCSQGYGEWEVK 420
DGCKVWHRSANMANYPAEPTCHVLRPNTRSLFSGLSPSTEYFFKVLPFGCSQGYGEWEVK
Sbjct: 361 DGCKVWHRSANMANYPAEPTCHVLRPNTRSLFSGLSPSTEYFFKVLPFGCSQGYGEWEVK 420
Query: 421 CSTRSLNHGSSQCSTQNSESMSIKEDLEQHQKNELNLKNKQWWGIQYDSPSANSNENDVC 480
CSTRSLNHGSSQCSTQNSESMSIKEDLEQHQKNELNLKNKQWWGIQYDSPSANSNENDVC
Sbjct: 421 CSTRSLNHGSSQCSTQNSESMSIKEDLEQHQKNELNLKNKQWWGIQYDSPSANSNENDVC 480
Query: 481 PDLHPKRAKLAKLDGASDNDESQLLPTSEVLPFMSSNSSLSEVPSKPDWVSSTPDSACKN 540
PDLHPKRAKLAKLDGASDNDESQLLPTSEVLPFMSSNSSLSEVPSKPDWVSSTPDSACKN
Sbjct: 481 PDLHPKRAKLAKLDGASDNDESQLLPTSEVLPFMSSNSSLSEVPSKPDWVSSTPDSACKN 540
Query: 541 HVERQYEYSVKVIRWLEHEGHMDKDFRVKFLTWFSLKASAQERRIVNAFVDALVSDPASL 600
HVERQYEYSVKVIRWLEHEGHMDKDFRVKFLTWFSLKASAQERRIVNAFVDALVSDPASL
Sbjct: 541 HVERQYEYSVKVIRWLEHEGHMDKDFRVKFLTWFSLKASAQERRIVNAFVDALVSDPASL 600
Query: 601 VAQLIDSFMEVVCSKEKPAQPNGGCCNLWH 630
VAQLIDSFMEVVCSKEKPAQPNGGCCNLWH
Sbjct: 601 VAQLIDSFMEVVCSKEKPAQPNGGCCNLWH 630
>Os02g0152500 Fibronectin, type III-like fold domain containing protein
Length = 749
Score = 319 bits (818), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 175/437 (40%), Positives = 258/437 (59%), Gaps = 26/437 (5%)
Query: 1 MDPGKHNGMSLKDRRELVYEVSQWPQGASEILQCWTRRDLLELICAELGKERKYTNVPKS 60
+DP K MS+ ++RELV E+S+ P+ A + LQ W+RR+++E++CA+LG+ERKYT + K
Sbjct: 10 IDPAKCRLMSVDEKRELVRELSKRPESAPDKLQSWSRREIVEILCADLGRERKYTGLSKQ 69
Query: 61 KMIAYLLKLVLRKNGQPKDDNANASILGQXXXXXXXXXXXXXQPHHFSRSAKSDSSMCRE 120
+M+ YL ++V K+ + + P R + + S +
Sbjct: 70 RMLEYLFRVVTGKS----SGGGVVEHVQEKEPTPEPNTANHQSPAKRQRKSDNPSRLPIV 125
Query: 121 AQAGSTAV---------CRNVACQATLNSGDAYCKRCSCCICHKYDENKDPSLWLVCSSD 171
A + +T + C N+AC+ATLN D +C+RCSCCIC KYD+NKDPSLWL CSSD
Sbjct: 126 ASSPTTEIPRPASNARFCHNLACRATLNPEDKFCRRCSCCICFKYDDNKDPSLWLFCSSD 185
Query: 172 TPYSGYSCGTSCHLKCALKNKKAGIFKNGCNKKSDGSFYCVWCGKMNWLMRNLRKQLAIA 231
P SC SCHL+CALK+ + GI ++G KK DG +YC C K N L+ + +KQL IA
Sbjct: 186 QPLQKDSCVFSCHLECALKDGRTGIMQSGQCKKLDGGYYCTRCRKQNDLLGSWKKQLVIA 245
Query: 232 RESRRVDVLCERLSLTHKMVKGSERYRELANIINSAVKILEKEVGCALDQVSAIT--GRG 289
+++RR+DVLC R+ L+HK++ +E+Y L I+++A+K LE EVG +S + GRG
Sbjct: 246 KDARRLDVLCHRIFLSHKILVSTEKYLVLHEIVDTAMKKLEAEVG----PISGVANMGRG 301
Query: 290 IVNRLCCGADVQKLCSCALEMVDSTL---SSTLDFETNNNLEAPGPQPQVFFVEITPFSV 346
IV+RL GA+VQKLC+ A+E ++S S L F+ + + P V F IT SV
Sbjct: 302 IVSRLAVGAEVQKLCARAIETMESLFCGSPSNLQFQRSRMI----PSNFVKFEAITQTSV 357
Query: 347 LVVLKYQDNIAEEIDGCKVWHRSANMANYPAEPTCHVLRPNTRSLFSGLSPSTEYFFKVL 406
VVL +A+++ VWHR A ++ + PT +L P + + L P+T Y FKV+
Sbjct: 358 TVVLDLGPILAQDVTCFNVWHRVAATGSFSSSPTGIILAPLKTLVVTQLVPATSYIFKVV 417
Query: 407 PFGCSQGYGEWEVKCST 423
F + +G WE K T
Sbjct: 418 AFSNYKEFGSWEAKMKT 434
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 46/88 (52%), Positives = 64/88 (72%)
Query: 543 ERQYEYSVKVIRWLEHEGHMDKDFRVKFLTWFSLKASAQERRIVNAFVDALVSDPASLVA 602
E YEY VKV+RWLE EG+++ +FRVKFLTW+SL+A+ +R+IV+ +V+ L+ DP SL
Sbjct: 662 EASYEYCVKVVRWLECEGYIETNFRVKFLTWYSLRATPHDRKIVSVYVNTLIDDPVSLSG 721
Query: 603 QLIDSFMEVVCSKEKPAQPNGGCCNLWH 630
QL D+F E + SK P+ +G C LWH
Sbjct: 722 QLADTFSEAIYSKRPPSVRSGFCMELWH 749
>Os05g0145400 Fibronectin, type III-like fold domain containing protein
Length = 607
Score = 304 bits (779), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 195/576 (33%), Positives = 305/576 (52%), Gaps = 80/576 (13%)
Query: 119 REAQAGSTAVCRNVACQATLNSGDAYCKRCSCCICHKYDENKDPSLWLVCSSDTPYSGYS 178
R+ + ST +C+N+AC+A + S D++CKRCSCCICH++D+NKDPSLWLVC+S+
Sbjct: 43 RDVKCISTWICKNLACKAVVTSEDSFCKRCSCCICHQFDDNKDPSLWLVCASENDDKN-C 101
Query: 179 CGTSCHLKCALKNKKAGIFKNGCNKKSDGSFYCVWCGKMNWLMRNLRKQLAIARESRRVD 238
CG+SCH++CAL++K+ G F G + DGS+ C CGK++ ++ ++QL IA+++RRVD
Sbjct: 102 CGSSCHIECALQHKRVGCFNLGNIIQLDGSYSCASCGKVSGILGYWKRQLVIAKDARRVD 161
Query: 239 VLCERLSLTHKMVKGSERYRELANIINSAVKILEKEVGCALDQVSAITGRGIVNRLCCGA 298
+LC R+ L+++++ G+ R++EL II A LE EVG LD +SA RGIV+RL G+
Sbjct: 162 MLCHRIYLSYRLLGGTTRFKELHGIIEDAKAKLESEVG-PLDGMSAKMARGIVSRLPAGS 220
Query: 299 DVQKLCSCALEMVDSTLSSTLDFETNNNLEAPGPQPQVFFVEITPFSVLVVLKYQD-NIA 357
D+QKLCS A+E D LSS D ++L A + FVEIT S++++LK +
Sbjct: 221 DLQKLCSLAIERADELLSSP-DLHLQDSLPAAC---RFRFVEITSSSIVIILKETPLPSS 276
Query: 358 EEIDGCKVWHRSANMANYPAEPTCHVLRPNTRS-LFSGLSPSTEYFFKVLPFGCSQGYGE 416
+ I G K+W+ + EP VL + R L L+P T+Y F+++ F G
Sbjct: 277 DTIRGYKLWYWKSREEPSMEEPV--VLSKDQRKVLVFNLAPCTQYSFRIISFTDDGILGH 334
Query: 417 WEVKCSTRSLNHGSSQCSTQNSESMSIKEDLEQHQKNE------LNLKNKQWWGIQYDSP 470
E KC T GS + + + D H++ + K + I +
Sbjct: 335 SESKCYT-----GSKELLFKRTTQNVAGADAHTHRREKTQAFKSTGFKIRDVGKILRQAW 389
Query: 471 SANSNENDVCPDLHPKRA--KLAKLDGASDNDESQLLP---------------------- 506
+ C D+H + ++ ++++ QLL
Sbjct: 390 TEEGRFEGFCEDMHEASCDRSVTDVEQTENSEQGQLLSGACRKLQFSTFSVPDLNVEAPV 449
Query: 507 ----------TSEVLPFMSSNSSLSEV-------PSKPDWVSSTPD--------SACKN- 540
S+++P S++S SE ++P V S P+ + C+
Sbjct: 450 PMDISPDKCYNSKIVPVRSNDSGGSETCAVGRSAEAEPPAVESRPEGCEQDGASTICREK 509
Query: 541 ------HVERQYEYSVKVIRWLEHEGHMDKDFRVKFLTWFSLKASAQERRIVNAFVDALV 594
++ +EY V+ IR LE +GH+D DFR+KFLTWFSL+++ +RR+V F+ L+
Sbjct: 510 QLARPRELDEDFEYCVQKIRMLECKGHIDNDFRMKFLTWFSLRSTENDRRVVTTFIKTLI 569
Query: 595 SDPASLVAQLIDSFMEVVCSKEKPAQPNGGCCNLWH 630
++P+ L QL+DSF E + K Q NG C LWH
Sbjct: 570 NEPSGLAEQLVDSFGEAINCKR---QRNGFCNELWH 602
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.131 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 21,969,700
Number of extensions: 895578
Number of successful extensions: 2272
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 2266
Number of HSP's successfully gapped: 5
Length of query: 630
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 523
Effective length of database: 11,448,903
Effective search space: 5987776269
Effective search space used: 5987776269
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 159 (65.9 bits)