Os08g0220600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Fibronectin, type III domain containing protein.
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Os08g0220600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Fibronectin, type III domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.96 | 0.21 | 10.3 | -0.523 | 0.555 | -0.603 | 0.0867 | -0.738 | -0.0994 | 4.33 | 21.41 | 3127 | -- | -- |
| 20.12 | 0.209 | 10.3 | -0.606 | 0.558 | -0.485 | 0.0428 | -- | -0.126 | 4.39 | 22.1 | 1719 | -- | -- |
| 19.98 | 0.208 | 10.3 | -0.524 | 0.557 | -0.606 | -- | -0.747 | -0.101 | 4.34 | 21.4 | 3162 | -- | -- |
| 20.11 | 0.209 | 10.3 | -0.612 | 0.566 | -0.487 | -- | -- | -0.131 | 4.32 | 22.08 | 1719 | -- | -- |
| 35.44 | 0.277 | 10.3 | -0.462 | -- | -0.552 | -- | -0.559 | -0.0997 | -- | 22 | 2609 | -- | -- |
| 28.44 | 0.25 | 10.3 | -0.417 | 0.564 | -- | 0.0312 | -- | 0.0281 | 4.29 | -- | -- | -- | -- |
| 28.44 | 0.25 | 10.3 | -0.417 | 0.564 | -- | -- | -- | 0.0279 | 4.29 | -- | -- | -- | -- |
| 35.09 | 0.276 | 10.3 | -0.562 | -- | -0.488 | -- | -- | -0.0905 | -- | 24.17 | 2684 | -- | -- |
| 28.33 | 0.249 | 10.3 | -- | 0.617 | -0.283 | -- | -- | 0.00184 | 3.76 | 22.08 | 1719 | -- | -- |
| 45.6 | 0.316 | 10.3 | -0.395 | -- | -- | -- | -- | 0.0429 | -- | -- | -- | -- | -- |
| 33.04 | 0.269 | 10.3 | -- | 0.556 | -- | -- | -- | 0.0744 | 4.31 | -- | -- | -- | -- |
| 42.65 | 0.304 | 10.3 | -- | -- | -0.434 | -- | -- | -0.0356 | -- | 24.9 | 1190 | -- | -- |
| 49.72 | 0.329 | 10.3 | -- | -- | -- | -- | -- | 0.0867 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.35 | temperature | 25 | 270 | < th | dose dependent | rect. | 11 | 20 |
| 5 | 19.54 | temperature | 25 | 720 | < th | dose dependent | rect. | 10 | 15 |
| 6 | 19.56 | temperature | 25 | 720 | < th | dose dependent | sin | 18 | NA |
| 18 | 19.68 | temperature | 25 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 46 | 19.89 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 2 |
| 92 | 19.99 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 98 | 20.00 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 151 | 20.10 | temperature | 25 | 30 | < th | dose dependent | no | NA | NA |
| 156 | 20.10 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 157 | 20.10 | temperature | 25 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 159 | 20.10 | temperature | 25 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 168 | 20.11 | temperature | 25 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 169 | 20.11 | temperature | 25 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 173 | 20.12 | temperature | 25 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 182 | 20.14 | temperature | 25 | 1440 | < th | dose dependent | rect. | 15 | 8 |
| 188 | 20.14 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 256 | 20.23 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 266 | 20.24 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 274 | 20.24 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 316 | 20.33 | temperature | 10 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 317 | 20.33 | temperature | 30 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 364 | 20.38 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 5 |
| 572 | 20.57 | temperature | 25 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 573 | 20.58 | temperature | 30 | 270 | < th | dose dependent | sin | 11 | NA |
| 574 | 20.58 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 586 | 20.58 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 623 | 20.60 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 23 |
| 638 | 20.61 | temperature | 25 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 640 | 20.61 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 944 | 20.77 | temperature | 10 | 270 | > th | dose dependent | sin | 11 | NA |
| 958 | 20.78 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 4 |