Os02g0152500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Fibronectin, type III-like fold domain containing protein.
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Os02g0152500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Fibronectin, type III-like fold domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.38 | 0.25 | 9.57 | 0.387 | 0.589 | 1.88 | -0.149 | 2.47 | 0.163 | 0.0859 | 0.8401 | 1438 | -- | -- |
| 30.38 | 0.257 | 9.55 | 0.589 | 0.671 | 1.32 | -0.124 | -- | 0.182 | 23.9 | 2.046 | 1412 | -- | -- |
| 28.46 | 0.248 | 9.58 | 0.391 | 0.609 | 1.89 | -- | 2.5 | 0.164 | 0.0544 | 0.83 | 1433 | -- | -- |
| 30.48 | 0.257 | 9.55 | 0.59 | 0.666 | 1.31 | -- | -- | 0.188 | 24 | 1.99 | 1412 | -- | -- |
| 33.93 | 0.271 | 9.55 | 0.477 | -- | 1.86 | -- | 0.76 | 0.2 | -- | 2.06 | 1550 | -- | -- |
| 52.06 | 0.338 | 9.58 | 0.301 | 0.568 | -- | -0.317 | -- | 0.0192 | 0.00278 | -- | -- | -- | -- |
| 52.49 | 0.339 | 9.58 | 0.314 | 0.57 | -- | -- | -- | 0.0208 | 23.9 | -- | -- | -- | -- |
| 33.93 | 0.271 | 9.55 | 0.633 | -- | 1.72 | -- | -- | 0.204 | -- | 2.053 | 1571 | -- | -- |
| 38.8 | 0.29 | 9.55 | -- | 0.628 | 1.07 | -- | -- | 0.134 | 24 | 2.495 | 1416 | -- | -- |
| 72.91 | 0.399 | 9.56 | 0.331 | -- | -- | -- | -- | 0.0285 | -- | -- | -- | -- | -- |
| 55.09 | 0.347 | 9.58 | -- | 0.574 | -- | -- | -- | -0.0142 | 24 | -- | -- | -- | -- |
| 42.3 | 0.303 | 9.54 | -- | -- | 1.48 | -- | -- | 0.136 | -- | 2.521 | 1605 | -- | -- |
| 75.81 | 0.406 | 9.57 | -- | -- | -- | -- | -- | -0.00823 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.81 | wind | 3 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 2 | 28.18 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 22 |
| 5 | 28.27 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 23 |
| 10 | 28.43 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 22 |
| 15 | 28.48 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 15 |
| 31 | 28.48 | radiation | 1 | 1440 | < th | dose dependent | rect. | 23 | 21 |
| 36 | 28.49 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 81 | 28.62 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 23 |
| 84 | 28.65 | radiation | 1 | 1440 | < th | dose dependent | sin | 13 | NA |
| 99 | 28.89 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 104 | 28.95 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 106 | 28.97 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 12 |
| 108 | 28.98 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 110 | 29.05 | wind | 5 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 122 | 29.20 | wind | 7 | 43200 | > th | dose independent | rect. | 6 | 15 |
| 124 | 29.21 | wind | 7 | 43200 | < th | dose independent | rect. | 6 | 15 |
| 125 | 29.22 | wind | 5 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 149 | 29.29 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 15 |
| 160 | 29.33 | wind | 9 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 167 | 29.35 | wind | 5 | 43200 | > th | dose dependent | sin | 19 | NA |
| 186 | 29.40 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 17 |
| 188 | 29.40 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 17 |
| 189 | 29.41 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 15 |
| 205 | 29.46 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 17 |
| 211 | 29.47 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 21 |
| 212 | 29.47 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 21 |
| 214 | 29.47 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 20 |
| 217 | 29.49 | wind | 7 | 43200 | < th | dose independent | sin | 19 | NA |
| 223 | 29.49 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 12 |
| 228 | 29.50 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 15 |
| 233 | 29.50 | radiation | 1 | 1440 | < th | dose dependent | sin | 0 | NA |
| 254 | 29.53 | wind | 7 | 43200 | > th | dose independent | sin | 18 | NA |
| 258 | 29.53 | wind | 7 | 43200 | > th | dose independent | rect. | 8 | 17 |
| 376 | 29.65 | wind | 7 | 43200 | > th | dose independent | rect. | 12 | 16 |
| 393 | 29.66 | temperature | 25 | 1440 | > th | dose dependent | sin | 23 | NA |
| 496 | 29.74 | wind | 7 | 43200 | > th | dose dependent | rect. | 13 | 18 |
| 504 | 29.75 | wind | 7 | 43200 | > th | dose independent | rect. | 19 | 23 |
| 515 | 29.76 | wind | 7 | 43200 | > th | dose independent | rect. | 12 | 13 |
| 518 | 29.76 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 7 |
| 577 | 29.81 | wind | 7 | 43200 | < th | dose independent | rect. | 19 | 23 |
| 589 | 29.83 | wind | 7 | 43200 | > th | dose independent | no | NA | NA |
| 640 | 29.87 | wind | 7 | 43200 | < th | dose independent | no | NA | NA |
| 649 | 29.87 | wind | 5 | 43200 | > th | dose dependent | rect. | 9 | 7 |
| 673 | 29.89 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 23 |
| 693 | 29.91 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 13 |
| 745 | 29.95 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 23 |
| 783 | 29.97 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 788 | 29.98 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 23 |
| 792 | 29.98 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 794 | 29.99 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 846 | 30.04 | radiation | 1 | 1440 | > th | dose independent | rect. | 7 | 23 |
| 976 | 30.15 | radiation | 1 | 1440 | < th | dose independent | rect. | 16 | 23 |
| 989 | 30.17 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 8 |