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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0145400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Fibronectin, type III-like fold domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.4 (0.0161) R2 : 0.00252
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0364 (0.0339) R2dN8 : 0.00326 R2N8 : 0.00252
σ : 0.303
deviance : 42.12
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
26.8 0.243 10.3 0.797 0.328 -0.521 -0.222 0.705 0.284 22.9 26 762 -- --
27.3 0.243 10.4 0.643 0.327 -0.484 -0.0279 -- 0.216 23 26.4 768 -- --
26.93 0.242 10.4 0.779 0.324 -0.524 -- 0.593 0.257 22.6 26.3 755 -- --
27.26 0.243 10.4 0.629 0.313 -0.482 -- -- 0.209 22.7 26.38 749 -- --
31.32 0.261 10.4 0.716 -- -0.356 -- 0.643 0.169 -- 27.1 671 -- --
33.86 0.273 10.4 0.471 0.175 -- -0.234 -- 0.0848 2.05 -- -- -- --
34.07 0.273 10.4 0.478 0.174 -- -- -- 0.0862 1.92 -- -- -- --
31.36 0.261 10.4 0.566 -- -0.299 -- -- 0.144 -- 26.73 537 -- --
36.76 0.282 10.4 -- 0.245 -0.325 -- -- 0.0975 23.3 26.7 746 -- --
35.9 0.28 10.4 0.486 -- -- -- -- 0.0902 -- -- -- -- --
40.1 0.296 10.4 -- 0.183 -- -- -- 0.0329 1.99 -- -- -- --
38.69 0.29 10.4 -- -- -0.197 -- -- 0.0828 -- 26.35 124 -- --
42.12 0.303 10.4 -- -- -- -- -- 0.0364 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 26.91 temperature 25 720 > th dose independent rect. 8 14
2 26.92 temperature 25 720 < th dose independent rect. 8 15
3 26.93 temperature 25 720 > th dose independent rect. 8 16
5 26.95 temperature 25 720 > th dose dependent sin 17 NA
13 27.03 temperature 25 720 > th dose dependent rect. 13 15
15 27.04 temperature 25 720 > th dose dependent rect. 13 11
19 27.04 temperature 25 720 > th dose dependent rect. 10 17
24 27.05 temperature 25 720 > th dose dependent rect. 10 15
77 27.21 temperature 25 720 > th dose independent sin 21 NA
84 27.22 temperature 25 720 < th dose independent sin 21 NA
85 27.22 radiation 1 720 > th dose independent rect. 9 10
97 27.23 temperature 25 10 < th dose dependent sin 20 NA
133 27.39 temperature 25 720 > th dose dependent rect. 13 22
134 27.40 temperature 30 30 < th dose dependent sin 18 NA
150 27.41 temperature 30 720 < th dose dependent sin 21 NA
171 27.46 temperature 25 90 < th dose independent sin 19 NA
187 27.49 temperature 30 720 < th dose dependent rect. 7 16
207 27.54 radiation 1 720 < th dose independent rect. 8 18
237 27.58 temperature 30 720 < th dose dependent rect. 9 12
279 27.63 temperature 10 720 > th dose dependent rect. 9 16
281 27.64 temperature 25 720 > th dose dependent no NA NA
289 27.65 temperature 25 720 > th dose dependent rect. 3 22
332 27.69 temperature 25 720 > th dose dependent rect. 16 23
343 27.71 temperature 25 1440 > th dose dependent rect. 13 1
348 27.72 temperature 10 720 > th dose dependent sin 20 NA
399 27.78 temperature 25 1440 > th dose dependent rect. 13 3
400 27.78 temperature 25 1440 > th dose dependent rect. 11 5
412 27.80 temperature 25 90 > th dose independent sin 19 NA
419 27.80 temperature 10 720 > th dose dependent rect. 13 8
456 27.83 radiation 1 720 < th dose dependent rect. 8 10
521 27.87 temperature 30 90 < th dose dependent rect. 5 23
522 27.87 temperature 30 30 < th dose dependent rect. 17 23
531 27.88 temperature 30 30 < th dose dependent rect. 1 23
544 27.90 radiation 1 720 < th dose independent rect. 8 10
585 27.93 temperature 30 30 < th dose dependent rect. 19 23
601 27.95 radiation 1 720 > th dose independent sin 20 NA
625 27.96 temperature 30 30 < th dose dependent rect. 15 23
626 27.96 temperature 30 30 < th dose dependent rect. 21 23
640 27.98 radiation 1 720 < th dose independent sin 19 NA
643 27.98 temperature 30 30 < th dose dependent no NA NA
664 27.99 temperature 30 30 < th dose dependent rect. 13 23
678 28.00 radiation 1 720 < th dose dependent rect. 8 19
681 28.00 temperature 30 30 < th dose dependent rect. 11 23
738 28.05 temperature 20 10 > th dose dependent sin 16 NA
843 28.12 temperature 30 720 < th dose dependent rect. 13 6
941 28.18 radiation 10 720 < th dose dependent rect. 16 1
954 28.18 temperature 30 30 < th dose dependent rect. 9 23
955 28.19 temperature 10 10 > th dose dependent sin 17 NA
988 28.21 temperature 25 720 > th dose independent rect. 23 23