BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0145400 Os05g0145400|AK106860
(607 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0145400 Fibronectin, type III-like fold domain contain... 1258 0.0
Os02g0152500 Fibronectin, type III-like fold domain contain... 331 1e-90
Os08g0220600 Fibronectin, type III domain containing protein 304 1e-82
Os03g0239200 Arabidopsis thaliana 130.7kDa hypothetical pro... 67 3e-11
>Os05g0145400 Fibronectin, type III-like fold domain containing protein
Length = 607
Score = 1258 bits (3254), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 607/607 (100%), Positives = 607/607 (100%)
Query: 1 MTKATPVKASKNLQLQKQSPTNLKETNGHVCKKEVVNGECPVRDVKCISTWICKNLACKA 60
MTKATPVKASKNLQLQKQSPTNLKETNGHVCKKEVVNGECPVRDVKCISTWICKNLACKA
Sbjct: 1 MTKATPVKASKNLQLQKQSPTNLKETNGHVCKKEVVNGECPVRDVKCISTWICKNLACKA 60
Query: 61 VVTSEDSFCKRCSCCICHQFDDNKDPSLWLVCASENDDKNCCGSSCHIECALQHKRVGCF 120
VVTSEDSFCKRCSCCICHQFDDNKDPSLWLVCASENDDKNCCGSSCHIECALQHKRVGCF
Sbjct: 61 VVTSEDSFCKRCSCCICHQFDDNKDPSLWLVCASENDDKNCCGSSCHIECALQHKRVGCF 120
Query: 121 NLGNIIQLDGSYSCASCGKVSGILGYWKRQLVIAKDARRVDMLCHRIYLSYRLLGGTTRF 180
NLGNIIQLDGSYSCASCGKVSGILGYWKRQLVIAKDARRVDMLCHRIYLSYRLLGGTTRF
Sbjct: 121 NLGNIIQLDGSYSCASCGKVSGILGYWKRQLVIAKDARRVDMLCHRIYLSYRLLGGTTRF 180
Query: 181 KELHGIIEDAKAKLESEVGPLDGMSAKMARGIVSRLPAGSDLQKLCSLAIERADELLSSP 240
KELHGIIEDAKAKLESEVGPLDGMSAKMARGIVSRLPAGSDLQKLCSLAIERADELLSSP
Sbjct: 181 KELHGIIEDAKAKLESEVGPLDGMSAKMARGIVSRLPAGSDLQKLCSLAIERADELLSSP 240
Query: 241 DLHLQDSLPAACRFRFVEITSSSIVIILKETPLPSSDTIRGYKLWYWKSREEPSMEEPVV 300
DLHLQDSLPAACRFRFVEITSSSIVIILKETPLPSSDTIRGYKLWYWKSREEPSMEEPVV
Sbjct: 241 DLHLQDSLPAACRFRFVEITSSSIVIILKETPLPSSDTIRGYKLWYWKSREEPSMEEPVV 300
Query: 301 LSKDQRKVLVFNLAPCTQYSFRIISFTDDGILGHSESKCYTGSKELLFKRTTQNVAGADA 360
LSKDQRKVLVFNLAPCTQYSFRIISFTDDGILGHSESKCYTGSKELLFKRTTQNVAGADA
Sbjct: 301 LSKDQRKVLVFNLAPCTQYSFRIISFTDDGILGHSESKCYTGSKELLFKRTTQNVAGADA 360
Query: 361 HTHRREKTQAFKSTGFKIRDVGKILRQAWTEEGRFEGFCEDMHEASCDRSVTDVEQTENS 420
HTHRREKTQAFKSTGFKIRDVGKILRQAWTEEGRFEGFCEDMHEASCDRSVTDVEQTENS
Sbjct: 361 HTHRREKTQAFKSTGFKIRDVGKILRQAWTEEGRFEGFCEDMHEASCDRSVTDVEQTENS 420
Query: 421 EQGQLLSGACRKLQFSTFSVPDLNVEAPVPMDISPDKCYNSKIVPVRSNDSGGSETCAVG 480
EQGQLLSGACRKLQFSTFSVPDLNVEAPVPMDISPDKCYNSKIVPVRSNDSGGSETCAVG
Sbjct: 421 EQGQLLSGACRKLQFSTFSVPDLNVEAPVPMDISPDKCYNSKIVPVRSNDSGGSETCAVG 480
Query: 481 RSAEAEPPAVESRPEGCEQDGASTICREKQLARPRELDEDFEYCVQKIRMLECKGHIDND 540
RSAEAEPPAVESRPEGCEQDGASTICREKQLARPRELDEDFEYCVQKIRMLECKGHIDND
Sbjct: 481 RSAEAEPPAVESRPEGCEQDGASTICREKQLARPRELDEDFEYCVQKIRMLECKGHIDND 540
Query: 541 FRMKFLTWFSLRSTENDRRVVTTFIKTLINEPSGLAEQLVDSFGEAINCKRQRNGFCNEL 600
FRMKFLTWFSLRSTENDRRVVTTFIKTLINEPSGLAEQLVDSFGEAINCKRQRNGFCNEL
Sbjct: 541 FRMKFLTWFSLRSTENDRRVVTTFIKTLINEPSGLAEQLVDSFGEAINCKRQRNGFCNEL 600
Query: 601 WHDDKGQ 607
WHDDKGQ
Sbjct: 601 WHDDKGQ 607
>Os02g0152500 Fibronectin, type III-like fold domain containing protein
Length = 749
Score = 331 bits (848), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 212/615 (34%), Positives = 326/615 (53%), Gaps = 71/615 (11%)
Query: 52 ICKNLACKAVVTSEDSFCKRCSCCICHQFDDNKDPSLWLVCASEND-DKNCCGSSCHIEC 110
C NLAC+A + ED FC+RCSCCIC ++DDNKDPSLWL C+S+ K+ C SCH+EC
Sbjct: 142 FCHNLACRATLNPEDKFCRRCSCCICFKYDDNKDPSLWLFCSSDQPLQKDSCVFSCHLEC 201
Query: 111 ALQHKRVGCFNLGNIIQLDGSYSCASCGKVSGILGYWKRQLVIAKDARRVDMLCHRIYLS 170
AL+ R G G +LDG Y C C K + +LG WK+QLVIAKDARR+D+LCHRI+LS
Sbjct: 202 ALKDGRTGIMQSGQCKKLDGGYYCTRCRKQNDLLGSWKKQLVIAKDARRLDVLCHRIFLS 261
Query: 171 YRLLGGTTRFKELHGIIEDAKAKLESEVGPLDGMSAKMARGIVSRLPAGSDLQKLCSLAI 230
+++L T ++ LH I++ A KLE+EVGP+ G+ A M RGIVSRL G+++QKLC+ AI
Sbjct: 262 HKILVSTEKYLVLHEIVDTAMKKLEAEVGPISGV-ANMGRGIVSRLAVGAEVQKLCARAI 320
Query: 231 ERADELL--SSPDLHLQDSLPAACRF-RFVEITSSSIVIILKETPLPSSDTIRGYKLWYW 287
E + L S +L Q S F +F IT +S+ ++L P+ + D + + +W+
Sbjct: 321 ETMESLFCGSPSNLQFQRSRMIPSNFVKFEAITQTSVTVVLDLGPILAQD-VTCFNVWHR 379
Query: 288 KSREEPSMEEPV-VLSKDQRKVLVFNLAPCTQYSFRIISFTDDGILGHSESKCYTG-SKE 345
+ P ++ + ++V L P T Y F++++F++ G E+K T KE
Sbjct: 380 VAATGSFSSSPTGIILAPLKTLVVTQLVPATSYIFKVVAFSNYKEFGSWEAKMKTSCQKE 439
Query: 346 LLFKRTTQNVAGADAHTHRREKTQAFK----STGFKIRDVGKILRQA-WTEEGRFEGFCE 400
+ K +G D + + + S G + + + E FE +CE
Sbjct: 440 VDLKGLMPGGSGLDQNNGSPKANSGGQSDPSSEGVDSNNNTAVYADLNKSPESDFE-YCE 498
Query: 401 DMHEASCDRSVTDVEQTENSEQGQLLSGACRKLQFSTF-SVPDLNVEAPVPMDISPDKCY 459
+ D++ + N+ Q + A R + S P L+ A +D P+
Sbjct: 499 NPEILDSDKASHHPNEPTNNSQSMPMVVA-RVTEVSGLEEAPGLSASA---LDEEPNSAV 554
Query: 460 NSKI---------------VPVR---SNDSGGSETCAV-GRSAEAEPP------------ 488
+++ VP SN G+E V R + + PP
Sbjct: 555 QTQLLRESSNSMEQNQRSEVPGSQDASNAPAGNEVVIVPPRYSGSIPPTAPRYMENGKDI 614
Query: 489 ---AVESRP-EGCEQDGASTICREKQLARPREL--------------DEDFEYCVQKIRM 530
+++++P + Q+G+S RE + + + +EYCV+ +R
Sbjct: 615 SGRSLKAKPGDNILQNGSSKPEREPGNSSNKRTSGKCEEIGHKDGCPEASYEYCVKVVRW 674
Query: 531 LECKGHIDNDFRMKFLTWFSLRSTENDRRVVTTFIKTLINEPSGLAEQLVDSFGEAINCK 590
LEC+G+I+ +FR+KFLTW+SLR+T +DR++V+ ++ TLI++P L+ QL D+F EAI K
Sbjct: 675 LECEGYIETNFRVKFLTWYSLRATPHDRKIVSVYVNTLIDDPVSLSGQLADTFSEAIYSK 734
Query: 591 RQ---RNGFCNELWH 602
R R+GFC ELWH
Sbjct: 735 RPPSVRSGFCMELWH 749
>Os08g0220600 Fibronectin, type III domain containing protein
Length = 630
Score = 304 bits (779), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 195/576 (33%), Positives = 305/576 (52%), Gaps = 80/576 (13%)
Query: 43 RDVKCISTWICKNLACKAVVTSEDSFCKRCSCCICHQFDDNKDPSLWLVCASENDDKN-C 101
R+ + ST +C+N+AC+A + S D++CKRCSCCICH++D+NKDPSLWLVC+S+
Sbjct: 119 REAQAGSTAVCRNVACQATLNSGDAYCKRCSCCICHKYDENKDPSLWLVCSSDTPYSGYS 178
Query: 102 CGSSCHIECALQHKRVGCFNLGNIIQLDGSYSCASCGKVSGILGYWKRQLVIAKDARRVD 161
CG+SCH++CAL++K+ G F G + DGS+ C CGK++ ++ ++QL IA+++RRVD
Sbjct: 179 CGTSCHLKCALKNKKAGIFKNGCNKKSDGSFYCVWCGKMNWLMRNLRKQLAIARESRRVD 238
Query: 162 MLCHRIYLSYRLLGGTTRFKELHGIIEDAKAKLESEVG-PLDGMSAKMARGIVSRLPAGS 220
+LC R+ L+++++ G+ R++EL II A LE EVG LD +SA RGIV+RL G+
Sbjct: 239 VLCERLSLTHKMVKGSERYRELANIINSAVKILEKEVGCALDQVSAITGRGIVNRLCCGA 298
Query: 221 DLQKLCSLAIERADELLSSP-DLHLQDSLPAAC---RFRFVEITSSSIVIILKETPLPSS 276
D+QKLCS A+E D LSS D ++L A + FVEIT S++++LK +
Sbjct: 299 DVQKLCSCALEMVDSTLSSTLDFETNNNLEAPGPQPQVFFVEITPFSVLVVLKYQD-NIA 357
Query: 277 DTIRGYKLWYWKSREEPSMEEPV--VLSKDQRKVLVFNLAPCTQYSFRIISFTDDGILGH 334
+ I G K+W+ + EP VL + R L L+P T+Y F+++ F G
Sbjct: 358 EEIDGCKVWHRSANMANYPAEPTCHVLRPNTRS-LFSGLSPSTEYFFKVLPFGCSQGYGE 416
Query: 335 SESKCYT-----GSKELLFKRTTQNVAGADAHTHRREKTQAFKSTGFKIRDVGKILRQAW 389
E KC T GS + + + D H++ + K + I +
Sbjct: 417 WEVKCSTRSLNHGSSQCSTQNSESMSIKEDLEQHQKNE------LNLKNKQWWGIQYDSP 470
Query: 390 TEEGRFEGFCEDMHEASCDRSVTDVEQTENSEQGQLLSGACRKLQFSTFSVPDLNVEAPV 449
+ C D+H + ++ ++++ QLL
Sbjct: 471 SANSNENDVCPDLHPKRA--KLAKLDGASDNDESQLLP---------------------- 506
Query: 450 PMDISPDKCYNSKIVPVRSNDSGGSETCAVGRSAEAEPPAVESRPEGCEQDGASTICREK 509
S+++P S++S SE ++P V S P+ + C+
Sbjct: 507 ----------TSEVLPFMSSNSSLSEV-------PSKPDWVSSTPD--------SACK-- 539
Query: 510 QLARPRELDEDFEYCVQKIRMLECKGHIDNDFRMKFLTWFSLRSTENDRRVVTTFIKTLI 569
++ +EY V+ IR LE +GH+D DFR+KFLTWFSL+++ +RR+V F+ L+
Sbjct: 540 -----NHVERQYEYSVKVIRWLEHEGHMDKDFRVKFLTWFSLKASAQERRIVNAFVDALV 594
Query: 570 NEPSGLAEQLVDSFGEAINCKR---QRNGFCNELWH 602
++P+ L QL+DSF E + K Q NG C LWH
Sbjct: 595 SDPASLVAQLIDSFMEVVCSKEKPAQPNGGCCNLWH 630
>Os03g0239200 Arabidopsis thaliana 130.7kDa hypothetical protein family protein
Length = 727
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 115/280 (41%), Gaps = 23/280 (8%)
Query: 43 RDVKCISTWICKNLACKAVVTSEDSFCKRCSCCICHQFDDNKDPSLWLVCASENDDKNCC 102
R++ C ST + CK + +++ FC C+C +CH+FD + W+ C + C
Sbjct: 379 RNLNCKSTLPVDDCDCK-ICSTKKGFCSACTCSVCHKFDCAANTCTWVGC-------DVC 430
Query: 103 GSSCHIECALQHK--RVGCFNLGNIIQLDGSYSCASCGKVSGILGYWKRQLVIAKDARRV 160
G CH+ CAL+ R G G I + + C +C S + G+ K +
Sbjct: 431 GHWCHVACALERNLIRPGPTLKGPIGTTEMQFQCLACNHSSEMFGFVKEVFNCCAENWNA 490
Query: 161 DMLCHRIYLSYRLLGGTTRF--KELHGIIEDAKAKLESE-VGPLDGMSAKM---ARGIVS 214
+ L + ++ G F K LH E+ + L + + PLD ++ + G+
Sbjct: 491 ETLMKELDFVRKIFAGCEDFEGKGLHAKAEEVLSLLGKKIISPLDATNSILQFFKYGVTD 550
Query: 215 RLPAGSDLQKLCSLAIERADELLSSPDLHLQDSLPAACRFRFVEITSSSIVIILKETPLP 274
GS + + + ++ ++ S L P F F TS LK +P P
Sbjct: 551 YSVTGSTSKGILAAQASQSTDMRS---LQTPTITPPKSSFNFKTTTSILDTDALKPSPKP 607
Query: 275 SSDTIRGYKLWYWKSREEPSMEEPVVLSKDQRKVLVFNLA 314
S I + + S+E+ S E +V K+ L LA
Sbjct: 608 LS--IEPH--FSTASKEDDSSLETIVKCKEAEAKLFQKLA 643
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.134 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 22,147,996
Number of extensions: 980195
Number of successful extensions: 2269
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 2259
Number of HSP's successfully gapped: 6
Length of query: 607
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 500
Effective length of database: 11,448,903
Effective search space: 5724451500
Effective search space used: 5724451500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 159 (65.9 bits)