BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0206900 Os08g0206900|AK071409
(489 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0206900 UTP--glucose-1-phosphate uridylyltransferase f... 930 0.0
Os04g0613700 UTP--glucose-1-phosphate uridylyltransferase f... 838 0.0
AK110393 137 2e-32
Os06g0701200 UTP--glucose-1-phosphate uridylyltransferase f... 93 5e-19
>Os08g0206900 UTP--glucose-1-phosphate uridylyltransferase family protein
Length = 489
Score = 930 bits (2404), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 455/489 (93%), Positives = 455/489 (93%)
Query: 1 MAEIVVXXXXXXXXXXXXXXXXQELVERLKDYGQEGAFALWDELAPEERDFLVRDIESLD 60
MAEIVV QELVERLKDYGQEGAFALWDELAPEERDFLVRDIESLD
Sbjct: 1 MAEIVVAPRAPAPAGRWGAAPPQELVERLKDYGQEGAFALWDELAPEERDFLVRDIESLD 60
Query: 61 LARIDRIVRCSLRSQGXXXXXXXXXXXXXXXXXXDRTPEDKQRWWKRGLKAISEGKLAVV 120
LARIDRIVRCSLRSQG DRTPEDKQRWWKRGLKAISEGKLAVV
Sbjct: 61 LARIDRIVRCSLRSQGVPLPAVEPVPESSVSTVEDRTPEDKQRWWKRGLKAISEGKLAVV 120
Query: 121 LLAGGQGTRLGSSDPKGCFSIGLPSGKSLFQLQAERILCIQKLAAQSTDGTPQIHWYIMT 180
LLAGGQGTRLGSSDPKGCFSIGLPSGKSLFQLQAERILCIQKLAAQSTDGTPQIHWYIMT
Sbjct: 121 LLAGGQGTRLGSSDPKGCFSIGLPSGKSLFQLQAERILCIQKLAAQSTDGTPQIHWYIMT 180
Query: 181 SPFTDEATRKFFESHRYFGLEPDQVTFFQQGTIPCVSADGRFIMETPYKVARAPDGNGGV 240
SPFTDEATRKFFESHRYFGLEPDQVTFFQQGTIPCVSADGRFIMETPYKVARAPDGNGGV
Sbjct: 181 SPFTDEATRKFFESHRYFGLEPDQVTFFQQGTIPCVSADGRFIMETPYKVARAPDGNGGV 240
Query: 241 YAALKSQRLLDDMAGRGVKYVDCYGVDNVLVRVADPTFLGYFIDKGVSAAAKVVRKAYPQ 300
YAALKSQRLLDDMAGRGVKYVDCYGVDNVLVRVADPTFLGYFIDKGVSAAAKVVRKAYPQ
Sbjct: 241 YAALKSQRLLDDMAGRGVKYVDCYGVDNVLVRVADPTFLGYFIDKGVSAAAKVVRKAYPQ 300
Query: 301 EKVGVFVQRGRGGPLSVVEYSEMDAAMTTEINQGTGRLRYCWSNVCLHMFTLDFLNQVTN 360
EKVGVFVQRGRGGPLSVVEYSEMDAAMTTEINQGTGRLRYCWSNVCLHMFTLDFLNQVTN
Sbjct: 301 EKVGVFVQRGRGGPLSVVEYSEMDAAMTTEINQGTGRLRYCWSNVCLHMFTLDFLNQVTN 360
Query: 361 SLEKDSIYHLAEKKIPSIHGYTAGLKLEQFIFDVFTYSPSTALFEILREEEFAPVKNANG 420
SLEKDSIYHLAEKKIPSIHGYTAGLKLEQFIFDVFTYSPSTALFEILREEEFAPVKNANG
Sbjct: 361 SLEKDSIYHLAEKKIPSIHGYTAGLKLEQFIFDVFTYSPSTALFEILREEEFAPVKNANG 420
Query: 421 ATYDTPDSARLMLLRLHSRWVVAAGGFLTHSVPLYMTGVEVSPLSSYAGENLEAICRGRT 480
ATYDTPDSARLMLLRLHSRWVVAAGGFLTHSVPLYMTGVEVSPLSSYAGENLEAICRGRT
Sbjct: 421 ATYDTPDSARLMLLRLHSRWVVAAGGFLTHSVPLYMTGVEVSPLSSYAGENLEAICRGRT 480
Query: 481 FHAPSEISF 489
FHAPSEISF
Sbjct: 481 FHAPSEISF 489
>Os04g0613700 UTP--glucose-1-phosphate uridylyltransferase family protein
Length = 545
Score = 838 bits (2165), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/468 (85%), Positives = 427/468 (91%), Gaps = 1/468 (0%)
Query: 23 QELVERLKDYGQEGAFALWDELAPEERDFLVRDIESLDLARIDRIVRCSLRSQGXXXXXX 82
Q ++ER+KDYGQEGAFALWDEL+PE+R+ LVRDIESLDL+RIDRI+R SL SQG
Sbjct: 78 QAMLERMKDYGQEGAFALWDELSPEDRELLVRDIESLDLSRIDRIIRRSLGSQGFTLPTV 137
Query: 83 XXXXXXXXXXXXDRTPEDKQRWWKRGLKAISEGKLAVVLLAGGQGTRLGSSDPKGCFSIG 142
+R PEDK+RWWK+GLKAISEGKLAVVLLAGGQGTRLGSSDPKGCFSIG
Sbjct: 138 EPVPESSVSKVEERLPEDKERWWKKGLKAISEGKLAVVLLAGGQGTRLGSSDPKGCFSIG 197
Query: 143 LPSGKSLFQLQAERILCIQKLAAQST-DGTPQIHWYIMTSPFTDEATRKFFESHRYFGLE 201
LPSGKSLFQLQAERILC+QKLAAQS+ + T IHWYIMTSPFTD+ TRKFFES +YFGLE
Sbjct: 198 LPSGKSLFQLQAERILCVQKLAAQSSPNNTVPIHWYIMTSPFTDDITRKFFESRKYFGLE 257
Query: 202 PDQVTFFQQGTIPCVSADGRFIMETPYKVARAPDGNGGVYAALKSQRLLDDMAGRGVKYV 261
DQVTFFQQGT+PCVSADGRFIMETPYKVA+APDGNGGVYAALKS+RLL+DM+ RGVKYV
Sbjct: 258 ADQVTFFQQGTLPCVSADGRFIMETPYKVAKAPDGNGGVYAALKSRRLLEDMSSRGVKYV 317
Query: 262 DCYGVDNVLVRVADPTFLGYFIDKGVSAAAKVVRKAYPQEKVGVFVQRGRGGPLSVVEYS 321
DCYGVDN LVRVADPTFLGYFIDK VS+AAKVVRKAYPQE VGVFV+RGRGGPLSVVEYS
Sbjct: 318 DCYGVDNALVRVADPTFLGYFIDKAVSSAAKVVRKAYPQENVGVFVRRGRGGPLSVVEYS 377
Query: 322 EMDAAMTTEINQGTGRLRYCWSNVCLHMFTLDFLNQVTNSLEKDSIYHLAEKKIPSIHGY 381
EMDAAM TEINQ TGRLRYCWSN+CLHMFTLDFLNQV NSLEKDS YHLAEKKIPSIHGY
Sbjct: 378 EMDAAMATEINQSTGRLRYCWSNICLHMFTLDFLNQVANSLEKDSTYHLAEKKIPSIHGY 437
Query: 382 TAGLKLEQFIFDVFTYSPSTALFEILREEEFAPVKNANGATYDTPDSARLMLLRLHSRWV 441
GLKLEQ+IFD F+YSPSTALFE+LREEEFAPVKNANGA+YDTPDSA+LMLLRLHSRWV
Sbjct: 438 AMGLKLEQYIFDAFSYSPSTALFEVLREEEFAPVKNANGASYDTPDSAKLMLLRLHSRWV 497
Query: 442 VAAGGFLTHSVPLYMTGVEVSPLSSYAGENLEAICRGRTFHAPSEISF 489
VAAGGFLTHSVPLYMTGVEVSPLSSYAGENLEAICRGRTFHAPSEISF
Sbjct: 498 VAAGGFLTHSVPLYMTGVEVSPLSSYAGENLEAICRGRTFHAPSEISF 545
>AK110393
Length = 840
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 89/236 (37%), Positives = 122/236 (51%), Gaps = 38/236 (16%)
Query: 97 TPEDKQR-WWKRGLKAISEGKLAVVLLAGG--QGTRLGSSD------------------- 134
TPE++Q W G + ++ G++A +L+A G +D
Sbjct: 315 TPEEQQADWEAAGFEQVARGRVATLLIATATADGAHTHPADTAKPPAAAAAAAAAAGGAA 374
Query: 135 -------PKGCFSI-GLPSGKSLFQLQAERILCIQKLAAQSTDG-----TPQIHWYIMTS 181
P+ + GLPSGKS+ QL AERIL +Q+LAA++T G + + WYIMTS
Sbjct: 375 SSESGSVPRAAVGVPGLPSGKSVLQLTAERILRLQQLAAEATFGRHAPVSRHVQWYIMTS 434
Query: 182 PFTDEATRKFFESHRYFGLEPDQVTFFQQGTIPCVSADG--RFIMETPYKVARAPDGNGG 239
P T + + H Y+GL P QVT F T P A + + P + R G+G
Sbjct: 435 PATHDKLQAILRDHHYYGLNPSQVTLFCCKTAPPAFAGEPLKALAMGPSSLTRGAPGSGE 494
Query: 240 VYAALKSQRLLDDMAGRGVKYVDCYGV-DNVLVRVADPTFLGYFIDKGVSAAAKVV 294
V+AALK LD M GV++V+ V DNVL R ADP F+G+ IDKG+ AAAKVV
Sbjct: 495 VFAALKRSGALDHMKRTGVRHVEVNAVDDNVLARPADPLFVGFAIDKGLDAAAKVV 550
>Os06g0701200 UTP--glucose-1-phosphate uridylyltransferase family protein
Length = 616
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 74/220 (33%), Positives = 111/220 (50%), Gaps = 13/220 (5%)
Query: 118 AVVLLAGGQGTRLGSSDPKGCFSIGLPSGKSLFQLQAERILCIQKLAAQSTDG--TPQIH 175
A VL+AGG G RLG K +GK Q E IL +Q+ + + +G +I
Sbjct: 142 AFVLVAGGLGERLGYKGIKVALPRETTTGKCFLQHYIESILALQEASCKLVEGECNTKIP 201
Query: 176 WYIMTSPFTDEATRKFFESHRYFGLEPDQVTFFQQGTIPCVS-ADGRFIME--TPYKVAR 232
+ IMTS T+ T K ES+ YFG+EP QV +Q + C++ D R ++ YK+
Sbjct: 202 FVIMTSDDTNALTVKLLESNSYFGMEPSQVHILKQEKVACLADNDARLALDPNDKYKIQT 261
Query: 233 APDGNGGVYAALKSQRLLDDMAGRGVKYVDCYGVDNVLVRVADPTFLGYFIDKGVSAAAK 292
P G+G V+A L S LL+ G K+V + N L+ A P+ LG KG + +
Sbjct: 262 KPHGHGDVHALLYSSGLLEQWKSTGRKWVLFFQDTNGLLFNAIPSALGVSATKGYNVNSL 321
Query: 293 VV-RKAYPQEKVGVFVQ----RGRGGPLSVVEYSEMDAAM 327
V RKA +E +G + GR ++ VEY+++D +
Sbjct: 322 AVPRKA--KEAIGGITKLTHVDGRTMVIN-VEYNQLDPLL 358
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.137 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,117,493
Number of extensions: 683268
Number of successful extensions: 1274
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1267
Number of HSP's successfully gapped: 4
Length of query: 489
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 384
Effective length of database: 11,553,331
Effective search space: 4436479104
Effective search space used: 4436479104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)