Os08g0206900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : UTP--glucose-1-phosphate uridylyltransferase family protein.
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Os08g0206900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : UTP--glucose-1-phosphate uridylyltransferase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.65 | 0.213 | 10.8 | 0.62 | 0.164 | 0.338 | 0.544 | -0.311 | 0.331 | 19.3 | 21.2 | 1002 | -- | -- |
| 20.87 | 0.213 | 10.8 | 0.689 | 0.172 | 0.366 | 0.5 | -- | 0.342 | 19.3 | 21.36 | 1100 | -- | -- |
| 21.37 | 0.215 | 10.8 | 0.627 | 0.17 | 0.348 | -- | -0.226 | 0.329 | 19.8 | 21.34 | 1098 | -- | -- |
| 21.49 | 0.216 | 10.8 | 0.685 | 0.174 | 0.36 | -- | -- | 0.346 | 19.8 | 21.31 | 1101 | -- | -- |
| 22.78 | 0.222 | 10.8 | 0.643 | -- | 0.353 | -- | -0.154 | 0.326 | -- | 21.36 | 860 | -- | -- |
| 25.05 | 0.235 | 10.8 | 0.84 | 0.197 | -- | 0.437 | -- | 0.447 | 19.9 | -- | -- | -- | -- |
| 25.54 | 0.237 | 10.8 | 0.826 | 0.197 | -- | -- | -- | 0.446 | 20.6 | -- | -- | -- | -- |
| 22.82 | 0.222 | 10.8 | 0.672 | -- | 0.383 | -- | -- | 0.336 | -- | 21.3 | 857 | -- | -- |
| 25.61 | 0.236 | 10.8 | -- | 0.2 | 0.744 | -- | -- | 0.193 | 20.2 | 18.29 | 42863 | -- | -- |
| 27.72 | 0.246 | 10.8 | 0.826 | -- | -- | -- | -- | 0.445 | -- | -- | -- | -- | -- |
| 43.54 | 0.309 | 10.8 | -- | 0.195 | -- | -- | -- | 0.354 | 20.9 | -- | -- | -- | -- |
| 27.18 | 0.243 | 10.8 | -- | -- | 0.725 | -- | -- | 0.212 | -- | 16.73 | 47520 | -- | -- |
| 45.7 | 0.316 | 10.8 | -- | -- | -- | -- | -- | 0.353 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.40 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 12 |
| 4 | 20.49 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 5 | 20.52 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 20 |
| 6 | 20.57 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 20 | 20.73 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 1 |
| 36 | 20.83 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 2 |
| 37 | 20.84 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 5 |
| 49 | 20.89 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 13 |
| 57 | 20.94 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 11 |
| 58 | 20.94 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 20 |
| 65 | 20.96 | temperature | 20 | 720 | < th | dose independent | sin | 9 | NA |
| 74 | 20.97 | temperature | 20 | 720 | > th | dose independent | sin | 11 | NA |
| 84 | 21.00 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 3 |
| 97 | 21.01 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 10 |
| 98 | 21.01 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 21 |
| 103 | 21.02 | temperature | 20 | 720 | < th | dose independent | rect. | 19 | 12 |
| 104 | 21.02 | temperature | 20 | 720 | < th | dose independent | rect. | 19 | 14 |
| 111 | 21.03 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 8 |
| 118 | 21.04 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 22 |
| 139 | 21.07 | temperature | 20 | 720 | < th | dose independent | rect. | 19 | 19 |
| 179 | 21.11 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 17 |
| 204 | 21.13 | temperature | 25 | 720 | < th | dose dependent | sin | 9 | NA |
| 207 | 21.13 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 21 |
| 218 | 21.14 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 19 |
| 276 | 21.17 | temperature | 20 | 720 | < th | dose dependent | rect. | 21 | 8 |
| 278 | 21.17 | temperature | 20 | 720 | < th | dose dependent | rect. | 19 | 11 |
| 358 | 21.22 | temperature | 20 | 720 | < th | dose independent | rect. | 12 | 21 |
| 386 | 21.24 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 6 |
| 398 | 21.24 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 22 |
| 408 | 21.25 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 520 | 21.31 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 533 | 21.31 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 553 | 21.32 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 22 |
| 569 | 21.34 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 579 | 21.34 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 584 | 21.34 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 658 | 21.39 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 8 | 5 |
| 670 | 21.39 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 3 |
| 678 | 21.39 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 680 | 21.39 | radiation | 30 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 694 | 21.40 | radiation | 40 | 10 | > th | dose independent | rect. | 13 | 23 |
| 699 | 21.40 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 6 |
| 731 | 21.41 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 21 |
| 743 | 21.42 | temperature | 25 | 720 | < th | dose dependent | sin | 2 | NA |
| 770 | 21.43 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 774 | 21.43 | radiation | 10 | 10 | > th | dose dependent | rect. | 7 | 5 |
| 815 | 21.44 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 2 |
| 842 | 21.44 | temperature | 25 | 720 | < th | dose dependent | rect. | 8 | 23 |
| 845 | 21.45 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 2 |
| 901 | 21.46 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 23 |
| 919 | 21.46 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 14 |
| 927 | 21.46 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 946 | 21.47 | temperature | 15 | 1440 | > th | dose dependent | rect. | 24 | 6 |
| 954 | 21.47 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 21 |
| 982 | 21.48 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 14 |
| 988 | 21.48 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 23 |