BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0206900 Os08g0206900|AK071409
(489 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G31070.2 | chr1:11084951-11088361 FORWARD LENGTH=506 776 0.0
AT2G35020.1 | chr2:14756803-14760477 FORWARD LENGTH=503 771 0.0
AT5G52560.1 | chr5:21331230-21334573 FORWARD LENGTH=615 76 4e-14
AT5G46420.1 | chr5:18829999-18832893 FORWARD LENGTH=654 58 9e-09
>AT1G31070.2 | chr1:11084951-11088361 FORWARD LENGTH=506
Length = 505
Score = 776 bits (2003), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/471 (76%), Positives = 409/471 (86%), Gaps = 4/471 (0%)
Query: 23 QELVERLKDYGQEGAFALWDELAPEERDFLVRDIESLDLARIDRIVRCSLRSQGXXXXXX 82
Q LVERLKDYGQE F+LWDEL+P+E+DFLVRDIE+LDL RIDRI+RCSL SQG
Sbjct: 35 QALVERLKDYGQEDIFSLWDELSPDEKDFLVRDIENLDLPRIDRIIRCSLHSQGLPVAAI 94
Query: 83 XXXXXXXXXXXXDRTPEDKQRWWKRGLKAISEGKLAVVLLAGGQGTRLGSSDPKGCFSIG 142
RT ED+++WWK GLK I EGKL VVLL+GGQGTRLGSSDPKGCF+IG
Sbjct: 95 EPVPENWVSTVDGRTMEDREKWWKMGLKTIYEGKLGVVLLSGGQGTRLGSSDPKGCFNIG 154
Query: 143 LPSGKSLFQLQAERILCIQKLAAQSTDGTP----QIHWYIMTSPFTDEATRKFFESHRYF 198
LPSGKSLFQ+QAERILC+Q+LAAQ P IHWYIMTSPFTDEATRK+F SH+YF
Sbjct: 155 LPSGKSLFQIQAERILCVQRLAAQVVSEGPIRPVTIHWYIMTSPFTDEATRKYFSSHKYF 214
Query: 199 GLEPDQVTFFQQGTIPCVSADGRFIMETPYKVARAPDGNGGVYAALKSQRLLDDMAGRGV 258
GLEPDQ++FFQQGT+PCV+ DG+FIMETP+ +A+APDGNGGVYAALK RLL+DMA RG+
Sbjct: 215 GLEPDQISFFQQGTLPCVTKDGKFIMETPFSLAKAPDGNGGVYAALKCSRLLEDMASRGI 274
Query: 259 KYVDCYGVDNVLVRVADPTFLGYFIDKGVSAAAKVVRKAYPQEKVGVFVQRGRGGPLSVV 318
KYVDCYGVDNVLVRVADPTFLGYFIDKG ++AAKVVRKAYPQE+VGVFV+RG+GGPL+VV
Sbjct: 275 KYVDCYGVDNVLVRVADPTFLGYFIDKGAASAAKVVRKAYPQEQVGVFVRRGKGGPLTVV 334
Query: 319 EYSEMDAAMTTEINQGTGRLRYCWSNVCLHMFTLDFLNQVTNSLEKDSIYHLAEKKIPSI 378
EYSE+D +M + INQ TGRL+YCWSNVCLHMFTLDFLNQV LEKDS+YHLAEKKIPS+
Sbjct: 335 EYSELDQSMASAINQRTGRLQYCWSNVCLHMFTLDFLNQVATGLEKDSVYHLAEKKIPSM 394
Query: 379 HGYTAGLKLEQFIFDVFTYSPSTALFEILREEEFAPVKNANGATYDTPDSARLMLLRLHS 438
+GYT GLKLEQFIFD F Y+PSTALFE+LREEEFAPVKN NG+ +DTP+SARL++LRLH+
Sbjct: 395 NGYTMGLKLEQFIFDSFPYAPSTALFEVLREEEFAPVKNVNGSNFDTPESARLLVLRLHT 454
Query: 439 RWVVAAGGFLTHSVPLYMTGVEVSPLSSYAGENLEAICRGRTFHAPSEISF 489
RWV+AAGGFLTHSVPLY TGVEVSPL SYAGENLEAICRGRTFHAP EIS
Sbjct: 455 RWVIAAGGFLTHSVPLYATGVEVSPLCSYAGENLEAICRGRTFHAPCEISL 505
>AT2G35020.1 | chr2:14756803-14760477 FORWARD LENGTH=503
Length = 502
Score = 771 bits (1992), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/472 (75%), Positives = 410/472 (86%), Gaps = 5/472 (1%)
Query: 23 QELVERLKDYGQEGAFALWDELAPEERDFLVRDIESLDLARIDRIVRCSLRSQGXXXXXX 82
Q LVERLKDYGQE F+LWDEL+PEERD L+RDIE+LDL RIDRI+RCSL SQG
Sbjct: 31 QALVERLKDYGQEDVFSLWDELSPEERDLLLRDIENLDLPRIDRIIRCSLHSQGLPVAAI 90
Query: 83 XXXXXXXXXXXXDRTPEDKQRWWKRGLKAISEGKLAVVLLAGGQGTRLGSSDPKGCFSIG 142
+RT ED+++WWK GLKAI EGKL VVLL+GGQGTRLGSSDPKGC++IG
Sbjct: 91 EPVPENCVSTVEERTKEDREKWWKMGLKAIYEGKLGVVLLSGGQGTRLGSSDPKGCYNIG 150
Query: 143 LPSGKSLFQLQAERILCIQKLAAQS-TDGTPQ----IHWYIMTSPFTDEATRKFFESHRY 197
LPSGKSLFQ+QAERILC+Q+LA+Q+ ++ +P I WYIMTSPFT E T+KFF+SH+Y
Sbjct: 151 LPSGKSLFQIQAERILCVQRLASQAMSEASPTRPVTIQWYIMTSPFTHEPTQKFFKSHKY 210
Query: 198 FGLEPDQVTFFQQGTIPCVSADGRFIMETPYKVARAPDGNGGVYAALKSQRLLDDMAGRG 257
FGLEPDQVTFFQQGT+PC+S DG+FIMETP+ +++APDGNGGVY ALKS RLL+DMA RG
Sbjct: 211 FGLEPDQVTFFQQGTLPCISKDGKFIMETPFSLSKAPDGNGGVYTALKSSRLLEDMASRG 270
Query: 258 VKYVDCYGVDNVLVRVADPTFLGYFIDKGVSAAAKVVRKAYPQEKVGVFVQRGRGGPLSV 317
+KYVDCYGVDNVLVRVADPTFLGYFIDK ++AAKVVRKAYPQEKVGVFV+RG+GGPL+V
Sbjct: 271 IKYVDCYGVDNVLVRVADPTFLGYFIDKSAASAAKVVRKAYPQEKVGVFVRRGKGGPLTV 330
Query: 318 VEYSEMDAAMTTEINQGTGRLRYCWSNVCLHMFTLDFLNQVTNSLEKDSIYHLAEKKIPS 377
VEY+E+D +M + NQ TGRL+YCWSNVCLHMFTLDFLNQV N LEKDS+YHLAEKKIPS
Sbjct: 331 VEYTELDQSMASATNQQTGRLQYCWSNVCLHMFTLDFLNQVANGLEKDSVYHLAEKKIPS 390
Query: 378 IHGYTAGLKLEQFIFDVFTYSPSTALFEILREEEFAPVKNANGATYDTPDSARLMLLRLH 437
I+G GLKLEQFIFD F Y+PSTALFE+LREEEFAPVKNANG+ YDTP+SARL++LRLH
Sbjct: 391 INGDIVGLKLEQFIFDCFPYAPSTALFEVLREEEFAPVKNANGSNYDTPESARLLVLRLH 450
Query: 438 SRWVVAAGGFLTHSVPLYMTGVEVSPLSSYAGENLEAICRGRTFHAPSEISF 489
+RWV+AAGGFLTHSVPLY TGVEVSPL SYAGENLEAICRGRTFHAP EIS
Sbjct: 451 TRWVIAAGGFLTHSVPLYATGVEVSPLCSYAGENLEAICRGRTFHAPCEISL 502
>AT5G52560.1 | chr5:21331230-21334573 FORWARD LENGTH=615
Length = 614
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 88/332 (26%), Positives = 136/332 (40%), Gaps = 42/332 (12%)
Query: 24 ELVERLKDYGQEGAFALWDELAPEERDFLVRDIESLDLARIDRIVRCSLRSQGXXXXXXX 83
EL + L + GQ F W EL ++++ LA D+I R + G
Sbjct: 29 ELAKILLENGQSHLFQQWPELGVDDKE---------KLAFFDQIARLNSSYPGGLAAYIK 79
Query: 84 XXXXXXXXXXXDRTPEDK------------------QRWWKRGLKAISEGKLAVVLLAGG 125
+ P D KRG+ + A VL+AGG
Sbjct: 80 TAKELLADSKVGKNPYDGFSPSVPSGENLTFGTDNFIEMEKRGV--VEARNAAFVLVAGG 137
Query: 126 QGTRLGSSDPKGCFSIGLPSGKSLFQLQAERILCIQKLAAQ-STDGTPQ-IHWYIMTSPF 183
G RLG + K +G Q E IL +Q+ + + +DG+ + I + IMTS
Sbjct: 138 LGERLGYNGIKVALPRETTTGTCFLQHYIESILALQEASNKIDSDGSERDIPFIIMTSDD 197
Query: 184 TDEATRKFFESHRYFGLEPDQVTFFQQGTIPCV-SADGRFIME--TPYKVARAPDGNGGV 240
T T E + YFG++P QV +Q + C+ D R ++ Y + P G+G V
Sbjct: 198 THSRTLDLLELNSYFGMKPTQVHLLKQEKVACLDDNDARLALDPHNKYSIQTKPHGHGDV 257
Query: 241 YAALKSQRLLDDMAGRGVKYVDCYGVDNVLVRVADPTFLGYFIDKGVSAAAKVV-RKAYP 299
++ L S LL G+K+V + N L+ A P LG K + V RKA
Sbjct: 258 HSLLYSSGLLHKWLEAGLKWVLFFQDTNGLLFNAIPASLGVSATKQYHVNSLAVPRKA-- 315
Query: 300 QEKVGVFVQ----RGRGGPLSVVEYSEMDAAM 327
+E +G + GR ++ VEY+++D +
Sbjct: 316 KEAIGGISKLTHVDGRSMVIN-VEYNQLDPLL 346
>AT5G46420.1 | chr5:18829999-18832893 FORWARD LENGTH=654
Length = 653
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 65/129 (50%), Gaps = 9/129 (6%)
Query: 178 IMTSPFTDEATRKFFESHRYFGLEPDQVTFFQQGTIPCVSAD------GRFIMETPYKVA 231
I++ T EA +K F+ + +FG E +++ ++ T+P V + + +M++P+++
Sbjct: 448 IVSPEHTIEALQKLFQDNDHFGFESEKIWILKEETLPVVCSSPEEPKKHKILMKSPWEIL 507
Query: 232 RAPDGNGGVYAALKSQRLLDDMAGRGVKYVDCYGVDNV---LVRVADPTFLGYFIDKGVS 288
+P G+GGV + L S D ++ G+ Y+ + ++ +P +G+ +G
Sbjct: 508 ESPVGSGGVLSILASHGTTDSLSTLGINYLQVHSIETKPQPSQHYINPMLVGFVSARGAE 567
Query: 289 AAAKVVRKA 297
+V ++
Sbjct: 568 IGIQVTEES 576
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.137 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,085,539
Number of extensions: 418485
Number of successful extensions: 877
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 871
Number of HSP's successfully gapped: 4
Length of query: 489
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 386
Effective length of database: 8,282,721
Effective search space: 3197130306
Effective search space used: 3197130306
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)