BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0203900 Os08g0203900|AK101564
(342 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0203900 UAA transporter family protein 692 0.0
Os09g0314333 UAA transporter family protein 572 e-163
Os03g0215000 Conserved hypothetical protein 343 8e-95
Os02g0154600 Conserved hypothetical protein 340 9e-94
Os08g0365600 137 2e-32
>Os08g0203900 UAA transporter family protein
Length = 342
Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/342 (100%), Positives = 342/342 (100%)
Query: 1 MAKQAYATSSLVIGYALCSSLLAIINKYAITKFSYPGLLTALQYLTSVAGVWTLGKLGLL 60
MAKQAYATSSLVIGYALCSSLLAIINKYAITKFSYPGLLTALQYLTSVAGVWTLGKLGLL
Sbjct: 1 MAKQAYATSSLVIGYALCSSLLAIINKYAITKFSYPGLLTALQYLTSVAGVWTLGKLGLL 60
Query: 61 YHDPFNLQTAKKFAPAALVFYLAIFTNTHLLKHANVDTFIVFRSLTPLLVAIADTAFRKQ 120
YHDPFNLQTAKKFAPAALVFYLAIFTNTHLLKHANVDTFIVFRSLTPLLVAIADTAFRKQ
Sbjct: 61 YHDPFNLQTAKKFAPAALVFYLAIFTNTHLLKHANVDTFIVFRSLTPLLVAIADTAFRKQ 120
Query: 121 PCPSKLTFVSLVTILGGAVGYVMTDSGFSLTAYSWAVAYLVTITTEMVYIKHMVTKLGLN 180
PCPSKLTFVSLVTILGGAVGYVMTDSGFSLTAYSWAVAYLVTITTEMVYIKHMVTKLGLN
Sbjct: 121 PCPSKLTFVSLVTILGGAVGYVMTDSGFSLTAYSWAVAYLVTITTEMVYIKHMVTKLGLN 180
Query: 181 TWGFVLYNNLLSLIIAPVFWFLTGEHLSVFRAIESRGQSWFELDAFVAVSLSCVFGLLIS 240
TWGFVLYNNLLSLIIAPVFWFLTGEHLSVFRAIESRGQSWFELDAFVAVSLSCVFGLLIS
Sbjct: 181 TWGFVLYNNLLSLIIAPVFWFLTGEHLSVFRAIESRGQSWFELDAFVAVSLSCVFGLLIS 240
Query: 241 FFGFAARKAISATAFTVTGVVNKFLTVAINVMIWDKHASSFGLVCLLFTLAGGVLYQQSV 300
FFGFAARKAISATAFTVTGVVNKFLTVAINVMIWDKHASSFGLVCLLFTLAGGVLYQQSV
Sbjct: 241 FFGFAARKAISATAFTVTGVVNKFLTVAINVMIWDKHASSFGLVCLLFTLAGGVLYQQSV 300
Query: 301 TLKGNSSVQREAVAKQGKADNDTAELDEEKQSLVSSPKDSNV 342
TLKGNSSVQREAVAKQGKADNDTAELDEEKQSLVSSPKDSNV
Sbjct: 301 TLKGNSSVQREAVAKQGKADNDTAELDEEKQSLVSSPKDSNV 342
>Os09g0314333 UAA transporter family protein
Length = 343
Score = 572 bits (1474), Expect = e-163, Method: Compositional matrix adjust.
Identities = 282/342 (82%), Positives = 308/342 (90%), Gaps = 1/342 (0%)
Query: 1 MAKQAYATSSLVIGYALCSSLLAIINKYAITKFSYPGLLTALQYLTSVAGVWTLGKLGLL 60
MAKQ YATSSLVIGYALCSSLLAIINKYA+TKF YP LLTALQYLTS GVW LGKLG L
Sbjct: 1 MAKQYYATSSLVIGYALCSSLLAIINKYAVTKFGYPALLTALQYLTSAGGVWILGKLGFL 60
Query: 61 YHDPFNLQTAKKFAPAALVFYLAIFTNTHLLKHANVDTFIVFRSLTPLLVAIADTAFRKQ 120
HDPFNL+ AKKFAPAA+VFYLAIFTNT+LL HANVDTFIVFRSLTPLLVAIADTAFRKQ
Sbjct: 61 CHDPFNLENAKKFAPAAIVFYLAIFTNTNLLYHANVDTFIVFRSLTPLLVAIADTAFRKQ 120
Query: 121 PCPSKLTFVSLVTILGGAVGYVMTDSGFSLTAYSWAVAYLVTITTEMVYIKHMVTKLGLN 180
PCPSKLTF+SLV ILGGAVGYV+TDS FSLTAYSWA+AYLV ITTEMVYIKH+VT LGLN
Sbjct: 121 PCPSKLTFLSLVVILGGAVGYVITDSAFSLTAYSWALAYLVIITTEMVYIKHIVTNLGLN 180
Query: 181 TWGFVLYNNLLSLIIAPVFWFLTGEHLSVFRAIESRGQSWFELDAFVAVSLSCVFGLLIS 240
TWGFVLYNNLLSL++AP FWFLTGE+ S+F AIESRG+ WF++DAFVAV+LSCVFGLLIS
Sbjct: 181 TWGFVLYNNLLSLMMAPFFWFLTGEYKSLFTAIESRGERWFQVDAFVAVALSCVFGLLIS 240
Query: 241 FFGFAARKAISATAFTVTGVVNKFLTVAINVMIWDKHASSFGLVCLLFTLAGGVLYQQSV 300
FFGFA RKAISATAFTVTGVVNKFLTVAINV+IWDKH+S FGL+CLLFT+AGGVLYQQSV
Sbjct: 241 FFGFATRKAISATAFTVTGVVNKFLTVAINVLIWDKHSSPFGLICLLFTIAGGVLYQQSV 300
Query: 301 TLKGNSSVQREA-VAKQGKADNDTAELDEEKQSLVSSPKDSN 341
T KG ++ Q E ++Q K DN+ ELDEEKQSLV + K SN
Sbjct: 301 TKKGITAPQHEPESSEQTKDDNEGIELDEEKQSLVPTSKSSN 342
>Os03g0215000 Conserved hypothetical protein
Length = 369
Score = 343 bits (881), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 178/325 (54%), Positives = 232/325 (71%), Gaps = 10/325 (3%)
Query: 14 GYALCSSLLAIINKYAITKFSYPGLLTALQYLTSVAGVWTLGKLGLLYHDPFNLQTAKKF 73
GY L +SLL+IINK+A+ KF YPG LTALQY TSV GV G+L L+ HD NL+T KF
Sbjct: 45 GYCLSASLLSIINKWAVMKFPYPGALTALQYFTSVVGVLLCGQLKLIEHDGLNLRTMWKF 104
Query: 74 APAALVFYLAIFTNTHLLKHANVDTFIVFRSLTPLLVAIADTAFRKQPCPSKLTFVSLVT 133
PAA++FY++IFTN+ LL HANVDTFIVFRS P+ VAI +T + QP PS T++SL T
Sbjct: 105 LPAAVMFYISIFTNSELLLHANVDTFIVFRSAVPIFVAIGETLYLHQPWPSLKTWLSLST 164
Query: 134 ILGGAVGYVMTDSGFSLTAYSWAVAYLVTITTEMVYIKHMVTKLGLNTWGFVLYNNLLSL 193
ILGG+V YV TD+ F++TAY+WAVAYL +++ + VYIKH+V +GLNTWG VLYNNL +L
Sbjct: 165 ILGGSVIYVFTDNQFTVTAYTWAVAYLASMSIDFVYIKHVVMTIGLNTWGLVLYNNLEAL 224
Query: 194 IIAPVFWFLTGEHLSVFRAIESRGQSWFELDAFVAVSLSCVFGLLISFFGFAARKAISAT 253
++ P+ L GE L+ + ++ +W D + V+LSC+FGL ISFFGF+ R+AISAT
Sbjct: 225 MLFPLEMLLMGE-LNQMKGDSAKVTNWLSSDVILPVALSCLFGLSISFFGFSCRRAISAT 283
Query: 254 AFTVTGVVNKFLTVAINVMIWDKHASSFGLVCLLFTLAGGVLYQQSVTLKGNSSVQREAV 313
FTV G+VNK LTV IN++IWDKHAS G + LL ++GGVLYQQS T + +A
Sbjct: 284 GFTVLGIVNKLLTVVINLLIWDKHASFVGTIGLLICMSGGVLYQQSTT-------KPKAP 336
Query: 314 AKQGKADNDTAE--LDEEKQSLVSS 336
+ K +ND + L E +Q L SS
Sbjct: 337 KAEPKEENDEEQQKLLEMQQGLESS 361
>Os02g0154600 Conserved hypothetical protein
Length = 369
Score = 340 bits (872), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 175/322 (54%), Positives = 229/322 (71%), Gaps = 13/322 (4%)
Query: 14 GYALCSSLLAIINKYAITKFSYPGLLTALQYLTSVAGVWTLGKLGLLYHDPFNLQTAKKF 73
GY L +SLL+IINK+A+ KF YPG LTALQY TSV GV G+L L+ HD NL+T KF
Sbjct: 45 GYCLSASLLSIINKWAVMKFPYPGALTALQYFTSVVGVLLCGQLKLIEHDGLNLRTMWKF 104
Query: 74 APAALVFYLAIFTNTHLLKHANVDTFIVFRSLTPLLVAIADTAFRKQPCPSKLTFVSLVT 133
PAA++FY++IFTN+ LL HANVDTFIVFRS P+ VAI +T + QP PS T++SL T
Sbjct: 105 LPAAVMFYISIFTNSELLLHANVDTFIVFRSAVPIFVAIGETFYLHQPWPSLKTWLSLST 164
Query: 134 ILGGAVGYVMTDSGFSLTAYSWAVAYLVTITTEMVYIKHMVTKLGLNTWGFVLYNNLLSL 193
ILGG+V YV TD+ F++TAY+WAVAYL +++ + VYIKH+V +GLNTWG VLYNNL +
Sbjct: 165 ILGGSVIYVFTDNQFTVTAYTWAVAYLASMSIDFVYIKHVVMTIGLNTWGLVLYNNLEAF 224
Query: 194 IIAPVFWFLTGEHLSVFRAIESRGQSWFELDAFVAVSLSCVFGLLISFFGFAARKAISAT 253
++ P+ LTGE L+ + ++ +W D + V+LSC+FGL ISFFGF+ R+AISAT
Sbjct: 225 MLFPLEMLLTGE-LNQMKGDNAKVTNWLSSDVILPVALSCLFGLSISFFGFSCRRAISAT 283
Query: 254 AFTVTGVVNKFLTVAINVMIWDKHASSFGLVCLLFTLAGGVLYQQSVTLKGNSSVQREAV 313
FTV G+VNK LTV IN++IWDKHAS G + LL ++G VLYQQS T + +A
Sbjct: 284 GFTVLGIVNKLLTVVINLLIWDKHASFVGTIGLLICMSGSVLYQQSTT-------KPKAP 336
Query: 314 AKQGKADNDTAELDEEKQSLVS 335
+ K +N DEE+Q L+
Sbjct: 337 KAEPKEEN-----DEEQQKLLE 353
>Os08g0365600
Length = 401
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/75 (89%), Positives = 68/75 (90%)
Query: 260 VVNKFLTVAINVMIWDKHASSFGLVCLLFTLAGGVLYQQSVTLKGNSSVQREAVAKQGKA 319
VVNKFLTVAINVMIWDKHASS GLVCLLFTLAGGVLYQQSVT K NS + REAVAKQG A
Sbjct: 99 VVNKFLTVAINVMIWDKHASSIGLVCLLFTLAGGVLYQQSVTTKWNSPLPREAVAKQGNA 158
Query: 320 DNDTAELDEEKQSLV 334
DNDTAELDEEKQ LV
Sbjct: 159 DNDTAELDEEKQKLV 173
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 59/72 (81%), Positives = 62/72 (86%)
Query: 28 YAITKFSYPGLLTALQYLTSVAGVWTLGKLGLLYHDPFNLQTAKKFAPAALVFYLAIFTN 87
YA+TKFSYPGLLTALQYLTSVAGVWTL KLGLLYHDPFN QTAKKFAPAALVFYLAIFTN
Sbjct: 18 YAMTKFSYPGLLTALQYLTSVAGVWTLAKLGLLYHDPFNFQTAKKFAPAALVFYLAIFTN 77
Query: 88 THLLKHANVDTF 99
T+ A +
Sbjct: 78 TYTSPEAKENNL 89
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.135 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,948,408
Number of extensions: 362978
Number of successful extensions: 1086
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 1083
Number of HSP's successfully gapped: 9
Length of query: 342
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 240
Effective length of database: 11,709,973
Effective search space: 2810393520
Effective search space used: 2810393520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 156 (64.7 bits)